Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0876
         (726 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF053356-3|AAC78792.1|  817|Homo sapiens ORF2 protein.                 34   0.60 
AK128339-1|BAC87391.1|  276|Homo sapiens protein ( Homo sapiens ...    31   5.6  

>AF053356-3|AAC78792.1|  817|Homo sapiens ORF2 protein.
          Length = 817

 Score = 33.9 bits (74), Expect = 0.60
 Identities = 19/37 (51%), Positives = 24/37 (64%)
 Frame = +1

Query: 424 PPPHREQHQCLAFLQQXQKHLR*TSPPSNSAYRYSSG 534
           PPP ++Q Q  AFLQQ Q  L+   P S SA ++SSG
Sbjct: 478 PPPQQQQQQLTAFLQQLQA-LK--PPSSRSAEKWSSG 511


>AK128339-1|BAC87391.1|  276|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46481 fis, clone THYMU3025772. ).
          Length = 276

 Score = 30.7 bits (66), Expect = 5.6
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +3

Query: 207 EAVIDQRFTAISIPCINTEWPASWVTFPSLSSPVISISTW*PGSLL 344
           ++V+    ++ S P    EWPA      SL  P+  +ST  PG+ L
Sbjct: 163 DSVLQSSLSSESWPIPEPEWPAQTAQLDSLKLPLSLVSTLDPGTCL 208


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,844,588
Number of Sequences: 237096
Number of extensions: 2535568
Number of successful extensions: 4272
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4272
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8567175942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)