Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0876
         (726 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase f...    29   2.4  
At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase f...    29   2.4  
At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase f...    29   2.4  
At5g49890.1 68418.m06178 chloride channel protein (CLC-c) identi...    28   5.5  
At5g25140.1 68418.m02979 cytochrome P450 family protein CYTOCHRO...    28   7.2  
At5g10020.1 68418.m01161 leucine-rich repeat transmembrane prote...    28   7.2  
At2g05860.1 68415.m00635 hypothetical protein similar to At2g108...    27   9.6  

>At4g10590.2 68417.m01733 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 910

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +3

Query: 123 VERTGVCNGYFTRPHA--RYPICRMRRNGQE 209
           +ER  +C G++TR ++   YP+C M  +G++
Sbjct: 129 IERKLICQGFYTRSYSVEVYPLCLMLTDGRD 159


>At4g10590.1 68417.m01732 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 910

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +3

Query: 123 VERTGVCNGYFTRPHA--RYPICRMRRNGQE 209
           +ER  +C G++TR ++   YP+C M  +G++
Sbjct: 129 IERKLICQGFYTRSYSVEVYPLCLMLTDGRD 159


>At4g10570.1 68417.m01730 ubiquitin carboxyl-terminal hydrolase
           family protein similar to ubiquitin-specific protease
           UBP5 [Arabidopsis thaliana] GI:6648604; contains Pfam
           profile PF00443: Ubiquitin carboxyl-terminal hydrolase
          Length = 923

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
 Frame = +3

Query: 123 VERTGVCNGYFTRPHA--RYPICRMRRNGQE 209
           +ER  +C G++TR ++   YP+C M  +G++
Sbjct: 129 IERKLICQGFYTRSYSVEVYPLCLMLTDGRD 159


>At5g49890.1 68418.m06178 chloride channel protein (CLC-c) identical
           to gi:1742956
          Length = 779

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 107 SLMRECRAYRGLQWLLHSTPCPL 175
           S++  C A+ GL WL   TPCP+
Sbjct: 387 SILSSCCAF-GLPWLSQCTPCPI 408


>At5g25140.1 68418.m02979 cytochrome P450 family protein CYTOCHROME
           P450 71B1 - Thlaspi arvense, EMBL:L24438
          Length = 496

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -3

Query: 388 EFGLGEGVFVSNHTNNSDPGYQVDMLITGDDKDG 287
           E GLGE  F  NHT     G  +D+L+ G D  G
Sbjct: 274 EIGLGEFQFTRNHTK----GILLDILLAGVDTSG 303


>At5g10020.1 68418.m01161 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase ERECTA,
           Arabidopsis thaliana, EMBL:AC004484
          Length = 1048

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/65 (30%), Positives = 25/65 (38%)
 Frame = -2

Query: 263 FGVNAGNTYSGKTLVNDGLLTIASHTADGVTGMGSSEVTIANPGTLDILASTNSAGDYTL 84
           F  N     S  +  ND LLT  S +  G+ G    E  I+  G     A TN   DY  
Sbjct: 658 FSSNVEQQSSSLSFSNDHLLTANSRSLSGIPG---CEAEISEQGAPATSAPTNLLDDYPA 714

Query: 83  TNALK 69
            +  K
Sbjct: 715 ASGRK 719


>At2g05860.1 68415.m00635 hypothetical protein similar to At2g10840,
           At5g35280, At2g10500, At4g07310, At4g07430, At1g39270
          Length = 238

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +3

Query: 459 VPTAGSKTPKVNFSTFEFSVPLFVRVNVPVPDVPTYILKCF 581
           V  +GS     +     FSV   VR+  PVP +P Y L  F
Sbjct: 80  VENSGSVRATTHSFKIGFSVDTVVRLTSPVPAIPHYRLASF 120


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,319,592
Number of Sequences: 28952
Number of extensions: 352611
Number of successful extensions: 741
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)