Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0875
         (649 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2QBS9 Cluster: NsuB; n=1; Streptococcus uberis|Rep: Ns...    33   4.5  
UniRef50_Q8IJX4 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  

>UniRef50_Q2QBS9 Cluster: NsuB; n=1; Streptococcus uberis|Rep: NsuB
           - Streptococcus uberis
          Length = 991

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = -1

Query: 259 FIASRCAQTRLIRYCSSTAMRRPQI*KCSESTYLLLKRNK 140
           F+ASR     L +Y S  +M+R +I + SES Y   KR+K
Sbjct: 45  FVASRSLYESLQKYYSGDSMKRKKINQLSESVYKYYKRSK 84


>UniRef50_Q8IJX4 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium falciparum 3D7|Rep: Putative uncharacterized
           protein - Plasmodium falciparum (isolate 3D7)
          Length = 349

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 565 HIYKE-KTSTEITFKNSQIHFNVDYKLT*TLFGLNKTGGVITSKQHVWTFFLHNNDSIGD 389
           H+ ++ K S E  F  S++H N   KL    F LNKT  V+  K   +T  L  ND+  +
Sbjct: 263 HVRRDLKISEENYFCPSKLHSNKYNKLETEFFILNKTKNVLMDKLEKFTDKLSKNDNKNE 322

Query: 388 RIRTV 374
            +  +
Sbjct: 323 ELENI 327


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 617,823,371
Number of Sequences: 1657284
Number of extensions: 11494503
Number of successful extensions: 24399
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 23658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24391
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)