Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0875
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    26   5.4  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   9.4  

>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 301 NRDGRTERSVFVNAFIASRCAQTRLIRYCSSTAMRRPQI*K 179
           N  G+ + SV    + +    +   +R CSS  M+RP + K
Sbjct: 39  NGKGKNDGSVKGKRYFSCEKGKGIFVRACSSNVMKRPSVVK 79


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 2/88 (2%)
 Frame = -3

Query: 284 GKICVCKRIYSVSLCSNPTYTLLL--IHGNATATNIKMQ*EHLLTVEAEQRAVLKTNDLT 111
           G +   + +Y   L SNP+Y  L   IH     + +K++      +  E  A   +  L 
Sbjct: 534 GHVLERQNVYIEDL-SNPSYKRLAREIHIEKLPSELKLRNAEFRGIFGESEA---STVLF 589

Query: 110 VTRSYSKFK*FNCHSARFYCTRKDVFFY 27
           V R  SK +       R YCT K ++ Y
Sbjct: 590 VCRVCSKREDQIRMPGRMYCTMKGIYIY 617


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,530
Number of Sequences: 5004
Number of extensions: 54085
Number of successful extensions: 116
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)