Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0875
         (649 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0113 + 1751204-1751507,1751791-1752039,1753136-1753398,175...    37   0.016
04_04_0424 + 25117260-25117332,25117466-25117719,25117849-251179...    31   1.0  
02_04_0053 - 19276891-19277079,19277947-19278073,19278320-192784...    30   1.8  
09_03_0031 + 11735431-11735728,11736704-11737041,11737150-117372...    29   4.2  
06_03_0809 + 24814590-24816593                                         29   4.2  
09_03_0041 + 11826788-11828002,11828101-11828563,11828668-118287...    28   7.4  
03_06_0490 + 34289904-34289967,34291912-34292237,34292401-342925...    28   7.4  

>09_01_0113 +
           1751204-1751507,1751791-1752039,1753136-1753398,
           1755192-1755357,1755445-1755534,1756376-1756674,
           1757022-1757231
          Length = 526

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 20/56 (35%), Positives = 29/56 (51%)
 Frame = -1

Query: 589 VATDLSHLHIYKEKTSTEITFKNSQIHFNVDYKLT*TLFGLNKTGGVITSKQHVWT 422
           VA  L++LH+Y EKT      K+S I     Y+   + FG  ++G   T K H+ T
Sbjct: 346 VAHALTYLHLYAEKTIIHRDVKSSNILLTESYRAKVSDFGFARSGPSDTEKTHIST 401


>04_04_0424 +
           25117260-25117332,25117466-25117719,25117849-25117907,
           25118206-25118303,25118378-25118467,25118927-25119225,
           25119660-25119881
          Length = 364

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 589 VATDLSHLHIYKEKTSTEITFKNSQIHFNVDYKLT*TLFGLNKTGGVITSKQHVWT 422
           VA  L++LH+Y EK       K+S I  N  ++     FG  +TG     +  + T
Sbjct: 180 VAHGLTYLHLYAEKPIIHRDVKSSNILLNEGFRAKVADFGFARTGPTEPDQSQIQT 235


>02_04_0053 -
           19276891-19277079,19277947-19278073,19278320-19278435,
           19279089-19279382
          Length = 241

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 367 NRVRSLFYRQYYRYYEEKTSKHVVLT**RLPFCSNRIVFKLVCNQH 504
           +R RS+  +     YE K  K  +LT   LP  ++R V   VCNQH
Sbjct: 195 SRARSMLQKLGLEKYE-KNFKKGLLTDQTLPLLTDRQVIVFVCNQH 239


>09_03_0031 +
           11735431-11735728,11736704-11737041,11737150-11737285,
           11737477-11737613,11737701-11737824,11738859-11739364
          Length = 512

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 21/55 (38%), Positives = 25/55 (45%)
 Frame = -1

Query: 586 ATDLSHLHIYKEKTSTEITFKNSQIHFNVDYKLT*TLFGLNKTGGVITSKQHVWT 422
           A  L+ LH   E+      FK S I  + DY    + FGL K G V   K HV T
Sbjct: 275 AKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPV-GDKTHVST 328


>06_03_0809 + 24814590-24816593
          Length = 667

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -1

Query: 589 VATDLSHLHIYKEKTSTEITFKNSQIHFNVDYKLT*TLFGLNKT----GGVITSK 437
           VA  L++LH Y          K+S +  + D++   + FGL +T    GG +TS+
Sbjct: 471 VADGLNYLHNYTRPPYVHKNLKSSNVLLDADFRAKVSNFGLARTVAGAGGQMTSR 525


>09_03_0041 +
           11826788-11828002,11828101-11828563,11828668-11828798,
           11829227-11829577,11829723-11829879,11829968-11830260,
           11830367-11830426,11830530-11830619,11830774-11830857
          Length = 947

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = -1

Query: 460 TGGVITSKQHVWTFFLHNNDSIGDRIRTVRDSYQCMS*RYKTLIEIVVFNAF*NRDGRTE 281
           TGGV+ S+   +  F   ND I  ++R V    Q  +  ++   E+    A  +     +
Sbjct: 606 TGGVLLSRNKEYIVFYRGNDFITPKVRQVLVEKQEQAITWQDEEELARLKA--SASISVK 663

Query: 280 RSVFVNAFIASRCAQTR 230
             VF N  +A   A+TR
Sbjct: 664 PKVFKNPPVAGTLAETR 680


>03_06_0490 +
           34289904-34289967,34291912-34292237,34292401-34292536,
           34292651-34292793,34292880-34293003,34293562-34293963,
           34294121-34294176
          Length = 416

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 21/55 (38%), Positives = 26/55 (47%)
 Frame = -1

Query: 586 ATDLSHLHIYKEKTSTEITFKNSQIHFNVDYKLT*TLFGLNKTGGVITSKQHVWT 422
           A  L++LH  + K      FK S I  + DY    + FGL K G V   K HV T
Sbjct: 196 AKGLAYLHSSEAKVIYR-DFKTSNILLDTDYSAKLSDFGLAKDGPV-GEKSHVST 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,964,356
Number of Sequences: 37544
Number of extensions: 291062
Number of successful extensions: 566
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)