Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0875
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46633| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.087
SB_16220| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.5  
SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_7934| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  
SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)                   27   9.9  

>SB_46633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = +3

Query: 48  STIETSRMTVELFKFRIRSCNCQIISFQNSPLFRF 152
           ST  T+RM  +LF FRIR  + +I +  N+ LFRF
Sbjct: 79  STRITNRMNTQLFLFRIRLSSTRITNRMNTQLFRF 113



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = +3

Query: 48  STIETSRMTVELFKFRIRSCNCQIISFQNSPLFRF 152
           ST  T+RM  +LF FRIR  + +I +  N+ LF F
Sbjct: 59  STRITNRMNKQLFLFRIRLSSTRITNRMNTQLFLF 93


>SB_16220| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 481

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 625 GKPVTLITPCHYVATDLSHLHIYKEKTSTEITF 527
           G+   ++T CHY+A  L   H+  +K   E+ F
Sbjct: 35  GRVARMLTRCHYMARSLLRRHLKDQKKKQELGF 67


>SB_42068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3367

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -1

Query: 631  KRGKPVTLITPCHYVATDLSHLHIYKEKTSTEITFKNSQIHFNV 500
            KRG  V  ITP HY+     ++ ++ EK S     +  Q+H NV
Sbjct: 3065 KRGGRVMAITPRHYLDFINHYVKLFSEKRS---DLEEQQLHLNV 3105


>SB_28087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1501

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/46 (32%), Positives = 25/46 (54%)
 Frame = -3

Query: 281 KICVCKRIYSVSLCSNPTYTLLLIHGNATATNIKMQ*EHLLTVEAE 144
           KI V K    + + +NP+Y+L  +H N  A  +K   +H L ++ E
Sbjct: 73  KILVDKFHPDMKMLTNPSYSLYEVHPNGEAHKLKAT-DHPLRIQLE 117


>SB_7934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 129

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 3/84 (3%)
 Frame = -3

Query: 290 SNGKICVCKRIYSVSLCSNPTYTL---LLIHGNATATNIKMQ*EHLLTVEAEQRAVLKTN 120
           SNG +    + YS S  SN T T     + H N T         H     A+  +    +
Sbjct: 8   SNGTVA---QSYSTSTHSNGTVTQSYSTITHSNGTVAQSYCTSTHSHGTVAQSYSTSTHS 64

Query: 119 DLTVTRSYSKFK*FNCHSARFYCT 48
             TV +SYS    F+C  A+ Y T
Sbjct: 65  HGTVAQSYSPSTHFHCTVAQSYST 88


>SB_52882| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1413

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +2

Query: 254 YKCVYKHRSFRSTISVLKRIEN--NDFY--QCFVSSR 352
           Y+  YKH    S +S LKR+ +  ++FY  +CF   R
Sbjct: 320 YEAFYKHHKKYSAMSALKRVPSIEDNFYKDRCFADQR 356


>SB_27771| Best HMM Match : SH2 (HMM E-Value=8.6e-16)
          Length = 896

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = -3

Query: 257 YSVSLCSNPTYTLL-LIHGNATATNIKMQ*EHLLTVEAEQ 141
           + V+  +N T TL+ +IH NA + +IK   EH++    EQ
Sbjct: 74  FIVNATTNLTLTLVAVIHYNADSKSIKKHSEHVVKYRVEQ 113


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,985,439
Number of Sequences: 59808
Number of extensions: 400933
Number of successful extensions: 859
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 859
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)