Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0875
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U97011-1|AAB52324.1|  174|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical...    27   8.7  

>U51994-2|AAA96065.3| 1311|Caenorhabditis elegans Hypothetical
           protein R03G5.3 protein.
          Length = 1311

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +3

Query: 39  IFPSTIETSRMTVELFKFRIRSCNC-QIISFQNSPLFRF 152
           +F  T +T  + ++LF+F++  C C +I+  + S  F+F
Sbjct: 321 LFACTPKTCNVFMKLFRFKVEECGCGKILMIEESWGFKF 359


>U97011-1|AAB52324.1|  174|Caenorhabditis elegans Hypothetical
           protein F31F7.3 protein.
          Length = 174

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
 Frame = +1

Query: 79  NYLNFEYDRVTVRSLVFKTALCSASTVS---RCSHCIFIFV 192
           N+     DR  V S  F   L  A  +    RCSHC+F+F+
Sbjct: 35  NHFTASPDRCLVTSSSFYEQLLIAGVLEERERCSHCLFLFL 75


>AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical
           protein F46F5.11 protein.
          Length = 796

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/52 (25%), Positives = 28/52 (53%)
 Frame = -3

Query: 245 LCSNPTYTLLLIHGNATATNIKMQ*EHLLTVEAEQRAVLKTNDLTVTRSYSK 90
           L S P + L+++    T  + K++  H L+VE +++     + L   +SY++
Sbjct: 63  LASFPDWNLVVVADTKTPLDWKLKNVHFLSVEYQKKLPFSMSSLLPYKSYTR 114


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,973,519
Number of Sequences: 27780
Number of extensions: 306008
Number of successful extensions: 692
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)