Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0873
         (664 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    24   1.3  
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   3.0  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   3.0  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   3.9  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   6.8  
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    21   6.8  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   9.0  
AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    21   9.0  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    21   9.0  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 399 CFSTILTFFSALYFLICICL 340
           C +   TF+SALYFL  I L
Sbjct: 225 CHTLANTFWSALYFLTIIFL 244


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
 Frame = +2

Query: 230 SANSSSRIKEQSDNIARDFLSGK----MGVDKFLEDFEPI--RKQMHIRKYKAEKNVRIV 391
           S +SSSRI +    +  DF SGK       D     F+    R + ++ K K E +  I+
Sbjct: 26  SPSSSSRILDIPCKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSC-II 84

Query: 392 EKQHQN 409
           +K H+N
Sbjct: 85  DKTHRN 90


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 6/66 (9%)
 Frame = +2

Query: 230 SANSSSRIKEQSDNIARDFLSGK----MGVDKFLEDFEPI--RKQMHIRKYKAEKNVRIV 391
           S +SSSRI +    +  DF SGK       D     F+    R + ++ K K E +  I+
Sbjct: 26  SPSSSSRILDIPCKVCGDFSSGKHYNIFACDGCAGFFKRSIRRNRQYVCKAKDEGSC-II 84

Query: 392 EKQHQN 409
           +K H+N
Sbjct: 85  DKTHRN 90


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 12/40 (30%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +1

Query: 430 KPYLPIFQLFT---ITESHKVCPTPVGPLTMPMPGMYGNH 540
           K  +P+  L T   +  S ++ P P GP+T+    +  NH
Sbjct: 71  KGAIPVVSLSTCSMLCGSTQLWPQPTGPVTLASRAVTFNH 110


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/9 (66%), Positives = 7/9 (77%)
 Frame = -3

Query: 245 CCCLQKCMS 219
           CCCL+ C S
Sbjct: 190 CCCLRTCSS 198


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -2

Query: 399 CFSTILTFFSALYFLICIC 343
           CF++ +  F+ ++F   IC
Sbjct: 63  CFNSYMYAFTHIFFFFAIC 81


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +3

Query: 474 PQSLPYPCRTPY 509
           PQ +PYP   PY
Sbjct: 75  PQGMPYPRFPPY 86


>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -2

Query: 195 ILFYNHLVILEYGYRAVPLIL 133
           I+FY + +ILE  ++ + LI+
Sbjct: 48  IVFYMYTLILEERFKLINLII 68


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 299 FFQIKSLLQCYLT 261
           FF + ++ QCYLT
Sbjct: 172 FFTVFNVAQCYLT 184


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,147
Number of Sequences: 336
Number of extensions: 3530
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)