Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0873
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    29   0.79 
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.4  
SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces...    27   3.2  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    26   4.2  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   5.6  
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo...    26   5.6  
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi...    25   7.4  
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces...    25   7.4  
SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces...    25   7.4  
SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.4  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    25   7.4  
SPAC18G6.07c |mra1||ribosome biogenesis protein Mra1|Schizosacch...    25   7.4  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    25   9.7  

>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1040

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +2

Query: 272 IARDFLSGKMGVDKFLEDFEPIRKQMHIRKYKAE 373
           IA +F   KM  DK +ED  PI+K  H+  ++AE
Sbjct: 500 IAYEF-KNKMAYDKSIEDNAPIKKFEHLPFFEAE 532


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 96  ELERMKAELQEKSELGEQLCTRIQELLDDYKTKS 197
           +LE +K   +E+  + E L  RIQ L     TKS
Sbjct: 435 QLEHLKHNYEEEKSMNENLLVRIQTLEKQNTTKS 468


>SPCC1450.02 ||SPCC191.13|bromodomain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 578

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = +3

Query: 102 ERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAESKN 260
           E+ K  +  ++E  E++  R+Q+ LD +  K++  SP++ +A    + +ES N
Sbjct: 520 EKKKGRVLSETEQAEKI-RRLQQQLDRFAGKTSPTSPESNNA-ANVSDSESDN 570


>SPAC26A3.09c |rga2||GTPase activating protein
            Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 385  SDIFLGFVLPYMHLFTD 335
            SDIF+  +L Y H+FTD
Sbjct: 1232 SDIFMMLILNYDHIFTD 1248


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 391 NNSDIFLGFVLPYMHLFTDGFK 326
           NNSD+  G+V   + L+TD +K
Sbjct: 852 NNSDLMKGYVTVCIELYTDFYK 873


>SPBC1683.09c |frp1||ferric-chelate reductase
           Frp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 564

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 403 SECHMVWCTKPYLPIFQLFTITESHKVCPT 492
           S+   +W  K YL + Q++T   +HKV  T
Sbjct: 47  SDKRQIWLEKYYLFVRQIYTYLVTHKVILT 76


>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
           Ran1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 470

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 392 EKQHQNAIWYGVQNHTYPYSNYLPSQN 472
           ++Q Q  +  G+Q   YP+  Y+P+QN
Sbjct: 322 QQQQQMNLQQGIQG--YPHQGYMPTQN 346


>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 13/40 (32%), Positives = 24/40 (60%)
 Frame = +3

Query: 87  KEPELERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGI 206
           ++  LER KAE+++ SE  E    ++ +L ++ K K + I
Sbjct: 140 QKERLERRKAEMKKMSEQAELESEKMADLKNEEKKKFSKI 179


>SPCC584.05 |sec1||SNARE binding protein Sec1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 317 LEDFEPIRKQMHIRKYKAEKNVRIVEKQHQNAI 415
           L DF+ +R Q  +    A++ + I EKQ  N I
Sbjct: 335 LSDFQELRDQYSLHLTMAQECMNIFEKQQLNLI 367


>SPCC1442.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 177

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +2

Query: 305 VDKFLED-FEPIRKQMHIRKYKAEKNVRIVEKQHQNAIWYGVQNH 436
           +  F+E  F  IRKQ  +   + +KN++  +K   +A+  GVQ H
Sbjct: 123 IGAFVEKRFPAIRKQRMLVLEQTQKNIQNAQKSMTSAV-EGVQKH 166


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 16/84 (19%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
 Frame = +2

Query: 221 SCTSANSSSRIKEQSDNIARDFLSGKMGVDKFLEDFEPIRKQMHIRKYKAEKNVRIVEKQ 400
           S  +A+S   +++ ++ +  D +   +  DKF+ DF  ++  + I+  +       ++  
Sbjct: 689 SIVNADSFIELRQCANLLLGDNMEEYLDTDKFMRDFNRLQPAVAIKFLERYNIPACLQDN 748

Query: 401 HQNAIWYGVQNHT-YPYSNYLPSQ 469
             N +   + N++  P SN  P +
Sbjct: 749 FTNLLCRHINNYSANPLSNDRPKR 772


>SPAC18G6.07c |mra1||ribosome biogenesis protein
           Mra1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 21/63 (33%), Positives = 24/63 (38%)
 Frame = +3

Query: 153 CTRIQELLDDYKTKSAGISPDTTHALLQTAAAESKNSQITLQETFYLEKWVLINF*KILN 332
           C   Q +L       A   PD TH  L T      N    LQ   +  K VLI     +N
Sbjct: 177 CDDHQGILKKLNRNIAQARPDITHQCLLTLLDSPLNKAGRLQVYIHTAKKVLIE----VN 232

Query: 333 PSV 341
           PSV
Sbjct: 233 PSV 235


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = +3

Query: 87   KEPELERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAESKNSQ 266
            KE   +  K + Q+  +L E L      L+D  KT    +   T H L  T +  +  ++
Sbjct: 922  KEHSEDNTKEKHQQLLDLLESLVGNNDNLIDSIKTPHTELQKITDHVLKGTTSLANHTNE 981

Query: 267  I 269
            +
Sbjct: 982  L 982


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,950
Number of Sequences: 5004
Number of extensions: 56969
Number of successful extensions: 187
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 187
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)