Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0873
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0116 - 27785083-27786123,27786201-27786278,27786364-277869... 36 0.029
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 31 0.82
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 31 1.1
12_02_0213 - 15745459-15745908,15745981-15746559 30 1.9
10_08_0105 - 14828097-14828226,14828371-14828547,14829690-148297... 29 2.5
01_05_0495 + 22705697-22705765,22705903-22706025,22708429-227085... 29 4.4
01_06_0188 - 27310814-27311138,27311197-27311547,27311682-273116... 28 7.6
>05_07_0116 -
27785083-27786123,27786201-27786278,27786364-27786976,
27787128-27787213,27787316-27787438,27787600-27787734,
27787930-27788019,27788796-27788981,27789560-27789661,
27789787-27789900,27790010-27790153,27790260-27790325,
27790895-27791056,27791668-27791916
Length = 1062
Score = 35.9 bits (79), Expect = 0.029
Identities = 24/58 (41%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 114 AELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAESK-NSQITLQET 284
AELQ KS E+ C + LD+ K +S H LLQ A ESK SQI E+
Sbjct: 560 AELQTKSSKLEERCVSLSSALDNAKRESVDWKNKYDHNLLQQKADESKLKSQIASLES 617
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 31.1 bits (67), Expect = 0.82
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 87 KEPELERMKAELQEKSELGEQLCTRIQELLDDYKT 191
KE ++E KAE+ E E E+L T + ++ DYK+
Sbjct: 45 KEEKMEAAKAEMGEVREENERLKTMLTRIVSDYKS 79
>12_02_1286 -
27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/37 (29%), Positives = 25/37 (67%)
Frame = +2
Query: 290 SGKMGVDKFLEDFEPIRKQMHIRKYKAEKNVRIVEKQ 400
S K +++ ++ EP+++++ R K E+ VR++EK+
Sbjct: 768 SEKSNIEEEIDRLEPVKEELETRIGKKEREVRVLEKK 804
>12_02_0213 - 15745459-15745908,15745981-15746559
Length = 342
Score = 29.9 bits (64), Expect = 1.9
Identities = 18/71 (25%), Positives = 35/71 (49%)
Frame = +3
Query: 6 REQVKDWDTEKEMFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDDY 185
+ +V + +TE A L E + E++ +KA+LQE+ ++ ++++E L
Sbjct: 154 QRRVGELETEVTDLTAQQLQLEEEHQAWGSEIDSLKAQLQEQLRESQEHVSQLEEPLRAA 213
Query: 186 KTKSAGISPDT 218
K + G S T
Sbjct: 214 KISTTGASTST 224
>10_08_0105 -
14828097-14828226,14828371-14828547,14829690-14829739,
14829841-14829909,14829976-14830074,14830148-14830226,
14830587-14830687,14830794-14830862,14831019-14831059,
14831313-14831663,14831676-14832511,14832674-14832777,
14833587-14834003,14836108-14836491
Length = 968
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -3
Query: 518 IGMVRGPTGVGQTLWDSVMVNNW-NMGKYGFVHHTIWHSDAVS 393
+ MV G + LW+ +++ +G YG V+H W+ V+
Sbjct: 672 VDMVLGEVSECEILWEDLLIGERIGLGSYGEVYHADWNGTEVA 714
>01_05_0495 + 22705697-22705765,22705903-22706025,22708429-22708586,
22709162-22709206,22709367-22709445,22709522-22709595,
22709703-22709809,22711116-22711301,22711882-22711920,
22712020-22712086,22712207-22712281,22713113-22713347,
22713425-22713755,22714530-22714710,22714810-22714950,
22715041-22715302,22715503-22715892,22717179-22717735,
22718421-22718557,22718672-22718853,22718959-22719339,
22719420-22719545,22719635-22719700,22720056-22721839,
22721914-22722193,22722386-22722616,22723067-22723588,
22723683-22723815,22723937-22724193
Length = 2405
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/50 (24%), Positives = 31/50 (62%)
Frame = +2
Query: 242 SSRIKEQSDNIARDFLSGKMGVDKFLEDFEPIRKQMHIRKYKAEKNVRIV 391
S +K+ +D++ RD L +G +KF+E + +RK + ++ +++ +++
Sbjct: 2320 SDDVKQLADSV-RDKLCDLIGTEKFVEVYNSVRKGLKQKRESRKQSEKLI 2368
>01_06_0188 -
27310814-27311138,27311197-27311547,27311682-27311693,
27313598-27313662,27314945-27314968
Length = 258
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -2
Query: 528 HSRHRHGKGSYRGRADFVG 472
H R RH + YRGR D+ G
Sbjct: 183 HRRERHDRDDYRGRDDYSG 201
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,303,231
Number of Sequences: 37544
Number of extensions: 325501
Number of successful extensions: 913
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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