Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0873
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_18353| Best HMM Match : Mod_r (HMM E-Value=0.0004)                  62   5e-10
SB_42644| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.039
SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_2772| Best HMM Match : DUF1279 (HMM E-Value=1.3)                    30   1.9  
SB_35649| Best HMM Match : M (HMM E-Value=6e-09)                       29   2.6  
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_52983| Best HMM Match : GntP_permease (HMM E-Value=1.2)             29   4.5  
SB_52732| Best HMM Match : M (HMM E-Value=0.019)                       28   5.9  
SB_2892| Best HMM Match : RasGAP_C (HMM E-Value=0.83)                  28   5.9  
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)                 28   7.8  
SB_10475| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  

>SB_18353| Best HMM Match : Mod_r (HMM E-Value=0.0004)
          Length = 85

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 36/81 (44%), Positives = 47/81 (58%)
 Frame = +3

Query: 15  VKDWDTEKEMFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDDYKTK 194
           +K  +  +EM  ASNRSLAEFNL  EP+L + + +L E  E  E L  + Q       T 
Sbjct: 1   IKKIEVNREMLTASNRSLAEFNLKIEPQLNQGRQQLIEAHERREMLQAQFQSNKAKLDTL 60

Query: 195 SAGISPDTTHALLQTAAAESK 257
           S   S DTT ALLQTA A+++
Sbjct: 61  SDQYSSDTTTALLQTAVAQAE 81


>SB_42644| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
 Frame = +3

Query: 9   EQVKDWDTEKEMFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDD-- 182
           E VK    E+E  +  N  +A +NL  +P+LE  K  +  ++E+ +       E LDD  
Sbjct: 52  ESVKKLQEEQENLMLQNEEIARYNLSLQPKLEACKDAI-IRNEIAD-------EFLDDWA 103

Query: 183 YKTKSAGISPDTTHALLQTAAAESKNSQITL 275
           +KT   G   + TH +L +    +K   +++
Sbjct: 104 FKTSKRGEIEERTHKILISPLNSNKVPSLSI 134


>SB_36985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +3

Query: 117 ELQEKSELGEQLCTRIQELL--DDYKTKSAGISPDTTHALLQTAAAESKNS 263
           +++ +SELG   C+ +++LL   DY   S  ++P+T H +     ++ K S
Sbjct: 184 KMKAESELGVHYCSGLKDLLKESDYVMLSCALTPETKHIIKSAELSQMKPS 234


>SB_31650| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3212

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
 Frame = +3

Query: 63   SLAEFNLGKEPELERMKAE---LQEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALL 233
            SL E N   + EL+ +  E   LQ + EL ++  TR++ LL+ Y+ KS+ I+  T   L 
Sbjct: 1980 SLVEENAKLKVELKDINVENEELQSQLELTKEELTRVEALLETYR-KSSSITSSTPSILQ 2038

Query: 234  QT--AAAESKNSQITLQE 281
            ++     E   SQ+   E
Sbjct: 2039 KSPGITVEEDMSQVKHME 2056


>SB_2772| Best HMM Match : DUF1279 (HMM E-Value=1.3)
          Length = 179

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/86 (26%), Positives = 43/86 (50%)
 Frame = +3

Query: 6   REQVKDWDTEKEMFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDDY 185
           RE + D +T +     + R   E  L +  ELER   EL+ ++ LGE++    ++    +
Sbjct: 29  RETIDDPNTSESRHQEA-RERNEERLSEIDELERENRELENQTPLGERIKAIFKKY--GF 85

Query: 186 KTKSAGISPDTTHALLQTAAAESKNS 263
              + G++  TT A + T+  +S +S
Sbjct: 86  TVTAIGLAVATTIAAIVTSLGKSLSS 111


>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
          Length = 1279

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 23/96 (23%), Positives = 40/96 (41%)
 Frame = +3

Query: 9    EQVKDWDTEKEMFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDDYK 188
            E+++  +TE     ++    +E    K  EL+ +K  L  K +  E     I+ L +  +
Sbjct: 802  EKLRALETELSELNSAKHKYSEDGKVKSKELDEIKEALSIKDKDIENYNLVIESLNEKLQ 861

Query: 189  TKSAGISPDTTHALLQTAAAESKNSQITLQETFYLE 296
              +  +     H+  Q +  ES  SQI     FY E
Sbjct: 862  QGTQDLVASNEHSKSQQSEIESLRSQIESLNKFYNE 897


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/70 (24%), Positives = 33/70 (47%)
 Frame = +3

Query: 33  EKEMFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISP 212
           E +   ASN +L       E E+  +K +L+      E    RI+ELL   +  S  ++ 
Sbjct: 358 EAKQLEASNNALKRDKKALEDEINLLKMQLESSKHANEVSQERIRELLAQLERASMQVAA 417

Query: 213 DTTHALLQTA 242
             + +++++A
Sbjct: 418 PVSVSVVESA 427


>SB_52983| Best HMM Match : GntP_permease (HMM E-Value=1.2)
          Length = 683

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 24/86 (27%), Positives = 42/86 (48%)
 Frame = +3

Query: 6   REQVKDWDTEKEMFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDDY 185
           RE + D +T  E      R  +E  L +  ELER   EL+ +  LGE++    ++    +
Sbjct: 172 RETIDDPNTS-ESRRQEAREHSEERLYEIEELERENRELENQKPLGERIKAIFKKY--GF 228

Query: 186 KTKSAGISPDTTHALLQTAAAESKNS 263
              + G++  TT A + T+  +S +S
Sbjct: 229 TVTAIGLAVATTIAAIVTSLGKSLSS 254


>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
          Length = 1366

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 96   ELERMKAELQEKSELGEQLCTRIQE 170
            +L+ +K +L+EK+EL EQL  ++ E
Sbjct: 1322 KLDALKIQLEEKAELAEQLRAQVDE 1346


>SB_2892| Best HMM Match : RasGAP_C (HMM E-Value=0.83)
          Length = 333

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/75 (22%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
 Frame = +3

Query: 6   REQVKDWDTEKE----MFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQEL 173
           R ++++W T+ +       A+ R   E  +  E ++  +  E+Q ++++G Q   R+QE+
Sbjct: 136 RVELENWKTKAQDIDAKLEATRRLHQEETICYENQINEVNEEIQNETDIGLQKSKRLQEM 195

Query: 174 ---LDDYKTKSAGIS 209
              L +YK + + ++
Sbjct: 196 ELELREYKQRLSSVA 210


>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
          Length = 1492

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
 Frame = +3

Query: 60  RSLAEFNLGKEPELERMKAELQEK--SELGEQLCTRIQELLDDYKTKSAGISPDTTHALL 233
           RS +EF+L ++    R KAE  EK  +++ +  C    E L  Y    + +S D TH + 
Sbjct: 578 RSFSEFHLQRDATERRQKAEQLEKELADVRDVECVLCGEDLKSYYQACSELS-DLTHRVK 636

Query: 234 QTAAAESKNSQ 266
            ++ ++  + +
Sbjct: 637 ASSVSQGASDK 647


>SB_10475| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -2

Query: 231 EVHELYLVIFQQILFYNHLVILEYGYRAVPLILISLVAQLSFSLTL 94
           E HE   ++ Q++       I+E+GYR + L+++S   +L  +  L
Sbjct: 13  EAHESQQILLQKLQGLYGTFIVEFGYRMILLMILSFGYKLQIARLL 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,743,762
Number of Sequences: 59808
Number of extensions: 407713
Number of successful extensions: 1285
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1284
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)