Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0873
         (664 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           31   0.032
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    27   0.70 
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    27   0.70 
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    26   1.2  
U28809-1|AAC47326.1|  140|Anopheles gambiae lysozyme protein.          25   2.8  
DQ007317-1|AAY24699.1|  140|Anopheles gambiae lysozyme c-1 protein.    25   2.8  
AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.       25   2.8  
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    24   3.7  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    24   3.7  
AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax home...    23   6.5  
AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax home...    23   6.5  
AY070254-1|AAL59653.1|  225|Anopheles gambiae glutathione S-tran...    23   8.6  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    23   8.6  

>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 31.1 bits (67), Expect = 0.032
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 18   KDWDTEKEMFIASNRSLAEFNLGKEPELERMKAE 119
            +DWDTE+E   ASNR  AE     + E +  + E
Sbjct: 1076 RDWDTEREQRAASNREEAEIQQQLQREEDERRTE 1109


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 26.6 bits (56), Expect = 0.70
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 105 RMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTT 221
           RMK EL+ K    + L   + ++ DD++   +GIS  TT
Sbjct: 363 RMK-ELELKERSSKSLLANVLDIDDDFRHPCSGISGSTT 400


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 26.6 bits (56), Expect = 0.70
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 105 RMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTT 221
           RMK EL+ K    + L   + ++ DD++   +GIS  TT
Sbjct: 363 RMK-ELELKERSSKSLLANVLDIDDDFRHPCSGISGSTT 400


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.8 bits (54), Expect = 1.2
 Identities = 19/68 (27%), Positives = 33/68 (48%)
 Frame = +3

Query: 18  KDWDTEKEMFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDDYKTKS 197
           K W   +E+F+  + +L +  L K+   E+ +   Q K E+ E +  R +E L+  K K 
Sbjct: 228 KAWLEYEELFLLYSATLKDLKLAKKCTEEKEQQYNQFKQEM-EAILARKKE-LETSKAKQ 285

Query: 198 AGISPDTT 221
             I   +T
Sbjct: 286 VAIGQRST 293


>U28809-1|AAC47326.1|  140|Anopheles gambiae lysozyme protein.
          Length = 140

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 374 KNVRIVEKQHQNAIWYGVQNH 436
           K  +++ K+H    WYG +NH
Sbjct: 107 KCAKLIHKRHGFNAWYGWKNH 127


>DQ007317-1|AAY24699.1|  140|Anopheles gambiae lysozyme c-1 protein.
          Length = 140

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 374 KNVRIVEKQHQNAIWYGVQNH 436
           K  +++ K+H    WYG +NH
Sbjct: 107 KCAKLIHKRHGFNAWYGWKNH 127


>AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.
          Length = 458

 Score = 24.6 bits (51), Expect = 2.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 443 GKYGFVHHTIWHSDAVSQQF*HFSR 369
           G+YG V   IWH ++V+ +   FSR
Sbjct: 160 GRYGEVWRGIWHGESVAVKI-FFSR 183


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 230 SANSSSRIKEQSDNIARDFLSGKMG 304
           +A SSS  +  S  + RD L+ KMG
Sbjct: 71  AAGSSSNSRRNSKQLQRDELAAKMG 95


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 230 SANSSSRIKEQSDNIARDFLSGKMG 304
           +A SSS  +  S  + RD L+ KMG
Sbjct: 71  AAGSSSNSRRNSKQLQRDELAAKMG 95


>AF080563-1|AAC31943.1|  310|Anopheles gambiae Ultrabithorax
           homeotic protein IVa protein.
          Length = 310

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 195 SAGISPDTTHALLQTAAAESKNSQITLQ 278
           S G+SP T H L QT  A+      ++Q
Sbjct: 46  SLGMSPYTNHHLHQTRTAQESPYDASIQ 73


>AF080562-1|AAC31942.1|  327|Anopheles gambiae Ultrabithorax
           homeotic protein IIa protein.
          Length = 327

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 195 SAGISPDTTHALLQTAAAESKNSQITLQ 278
           S G+SP T H L QT  A+      ++Q
Sbjct: 46  SLGMSPYTNHHLHQTRTAQESPYDASIQ 73


>AY070254-1|AAL59653.1|  225|Anopheles gambiae glutathione
           S-transferase E4 protein.
          Length = 225

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -3

Query: 488 GQTLWDSVMVNNWNMGKYGFVH-HTIWHSDAVSQ 390
           G  +WDS  +N + + KYG     +++ SD V +
Sbjct: 62  GTIVWDSHAINVYLVSKYGKPEGDSLYPSDVVQR 95


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.0 bits (47), Expect = 8.6
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 90  EPELERMKAELQEKSELGEQLCTRIQEL 173
           E ELER+K  + EK +  EQ+  R + +
Sbjct: 327 EQELERLKITIAEKEKELEQVRPRYEAM 354


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 687,492
Number of Sequences: 2352
Number of extensions: 13501
Number of successful extensions: 38
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66068490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)