Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0873
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            25   0.49 
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    23   2.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   6.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.0  

>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -3

Query: 335 WVQNLLEIYQHPFFQI 288
           W+++ +E+Y H FFQ+
Sbjct: 56  WLKDGIELYHHKFFQV 71


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 435 ILTHIPIIYHHRIPQSLPYP 494
           +LT + +I+HHR P     P
Sbjct: 273 VLTVLVLIFHHRTPDRYVMP 292


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 435 ILTHIPIIYHHRIPQSLPYP 494
           +LT + +I+HHR P     P
Sbjct: 273 VLTVLVLIFHHRTPDRYVMP 292


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 435 ILTHIPIIYHHRIPQSLPYP 494
           +LT + +I+HHR P     P
Sbjct: 273 VLTVLVLIFHHRTPDRYVMP 292


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 435 ILTHIPIIYHHRIPQSLPYP 494
           +LT + +I+HHR P     P
Sbjct: 273 VLTVLVLIFHHRTPDRYVMP 292


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 435 ILTHIPIIYHHRIPQSLPYP 494
           +LT + +I+HHR P     P
Sbjct: 273 VLTVLVLIFHHRTPDRYVMP 292


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +3

Query: 435 ILTHIPIIYHHRIPQSLPYP 494
           +LT + +I+HHR P     P
Sbjct: 273 VLTVLVLIFHHRTPDRYVMP 292


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 585 NILEHTTEILGIISEMISVHSRHRHGKGSYRGRA 484
           N++  T E+LG++    SVHS    G+ + RG +
Sbjct: 367 NMMMITPELLGLMPSGSSVHS--DSGENNSRGHS 398


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 103 SNSGSFPKLNSASDLLLAMNISFSVSQ 23
           S   S PKLN ++ L+     +F VSQ
Sbjct: 362 STGSSIPKLNLSTALMSQPPPNFGVSQ 388


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,087
Number of Sequences: 438
Number of extensions: 4343
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)