Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0873
         (664 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15130.1 68418.m01773 WRKY family transcription factor contai...    29   2.1  
At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / hea...    29   2.8  
At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2) ide...    29   3.6  
At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2) ide...    29   3.6  
At5g20340.1 68418.m02420 beta-1,3-glucanase (BG5) identical to p...    29   3.6  
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea...    28   4.8  
At1g33220.1 68414.m04104 beta-1,3-glucanase, putative similar to...    28   4.8  
At3g54170.1 68416.m05988 FKBP12 interacting protein (FIP37) iden...    28   6.4  
At2g34900.1 68415.m04285 DNA-binding bromodomain-containing prot...    27   8.4  

>At5g15130.1 68418.m01773 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain; TMV
           response-related gene product, Nicotiana tabacum,
           EMBL:AB024510
          Length = 548

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +3

Query: 84  GKEPELERMKAELQEKSELGEQLCTRIQELLDDYKT 191
           G   ELE  KAE+ E  E  E+L   ++ +  DYK+
Sbjct: 31  GDHQELESAKAEMSEVKEENEKLKGMLERIESDYKS 66


>At5g52640.1 68418.m06535 heat shock protein 81-1 (HSP81-1) / heat
           shock protein 83 (HSP83) nearly identical to SP|P27323
           Heat shock protein 81-1 (HSP81-1) (Heat shock protein
           83) {Arabidopsis thaliana}; contains Pfam profiles
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein, PF00183: Hsp90 protein
          Length = 705

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 19/57 (33%), Positives = 30/57 (52%)
 Frame = +3

Query: 12  QVKDWDTEKEMFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDD 182
           Q+K++D +K +      S  +  L  E E E  K + +EK +  E LC  I+E+L D
Sbjct: 509 QLKEYDGKKLV------SATKEGLKLEDETEEEKKKREEKKKSFENLCKTIKEILGD 559


>At5g40840.2 68418.m04959 cohesion family protein SYN2 (SYN2)
           identical to cohesion family protein SYN2 [Arabidopsis
           thaliana] GI:12006360; supporting cDNA
           gi|12006359|gb|AF281154.1|AF281154
          Length = 810

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +3

Query: 90  EPELERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAESKNS 263
           EP++       QE+  + E +CT +Q L+D +++    +  D     L++     K S
Sbjct: 243 EPQMSEDIRIAQEEDTVRETICTIVQRLVDSHESSGDNLHRDGHTENLESEKTSKKTS 300


>At5g40840.1 68418.m04958 cohesion family protein SYN2 (SYN2)
           identical to cohesion family protein SYN2 [Arabidopsis
           thaliana] GI:12006360; supporting cDNA
           gi|12006359|gb|AF281154.1|AF281154
          Length = 809

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = +3

Query: 90  EPELERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTTHALLQTAAAESKNS 263
           EP++       QE+  + E +CT +Q L+D +++    +  D     L++     K S
Sbjct: 243 EPQMSEDIRIAQEEDTVRETICTIVQRLVDSHESSGDNLHRDGHTENLESEKTSKKTS 300


>At5g20340.1 68418.m02420 beta-1,3-glucanase (BG5) identical to
           plant beta-1,3-glucanase bg5 GI:2808439 [Arabidopsis
           thaliana]
          Length = 354

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 430 KPYLPIFQLFTITESHKVCPTPVGPLTMPM 519
           +PYL    +  IT  ++V P P+GP  +P+
Sbjct: 121 EPYLSDINIAFITVGNEVIPGPIGPQVLPV 150


>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
           discoideum]
          Length = 515

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 27/112 (24%), Positives = 53/112 (47%), Gaps = 11/112 (9%)
 Frame = +3

Query: 6   REQVKDWDTEKEMFIASNRSLAEFNLGKEPELERMKAELQEK----SELGEQL------C 155
           +E+ +  +TE +    +   L+E  + +  E    KA LQEK    ++L ++L      C
Sbjct: 54  KEKTEKLETELQQCYKAQSRLSEQLVIEVAESRTSKAILQEKELLINDLQKELTQRREDC 113

Query: 156 TRIQELLDDYKTKSAGI-SPDTTHALLQTAAAESKNSQITLQETFYLEKWVL 308
           TR+QE L++ KTK+  +   +      Q     S+  +   +    +++W+L
Sbjct: 114 TRLQEELEE-KTKTVDVLIAENLEIRSQLEEMTSRVQKAETENKMLIDRWML 164


>At1g33220.1 68414.m04104 beta-1,3-glucanase, putative similar to
           plant beta-1,3-glucanase bg4 GI:2808438 from
           [Arabidopsis thaliana]
          Length = 335

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 430 KPYLPIFQLFTITESHKVCPTPVGPLTMPM 519
           +PYL    +  IT  ++V P P+GP  +P+
Sbjct: 112 EPYLADVNIAFITVGNEVIPGPIGPQVLPV 141


>At3g54170.1 68416.m05988 FKBP12 interacting protein (FIP37)
           identical to FKBP12 interacting protein (FIP37)
           GI:3859944 from [Arabidopsis thaliana]
          Length = 330

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = +3

Query: 9   EQVKDWDTEKEMFIASNRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDDYK 188
           E   D +   E  I     L E    KE E+ER+K  L+  SEL       + E+ +D K
Sbjct: 268 ELTNDVERSNETVIILQEKLEE----KEKEIERVKKGLEIVSELVGDKKDEVDEIDEDAK 323

Query: 189 TKSAG 203
            + AG
Sbjct: 324 EEIAG 328


>At2g34900.1 68415.m04285 DNA-binding bromodomain-containing protein
           contains bromodomain, INTERPRO:IPR001487
          Length = 386

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +3

Query: 57  NRSLAEFNLGKEPELERMKAELQEKSELGEQLCTRIQELLDDYKTKSAGISPDTT 221
           N  LA FN   E ELE     + E ++   QL  ++ E+   Y TK      +T+
Sbjct: 19  NTELAVFNGNGESELENFGTCVDEITDRVNQLEQKVVEVEHFYSTKDGAAQTNTS 73


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,760,929
Number of Sequences: 28952
Number of extensions: 283977
Number of successful extensions: 914
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 912
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)