Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0872
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M...    26   4.4  
SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase family...    26   5.9  
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    25   7.8  

>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 685

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 588 HSWFSKLCRFFNRHPKRANRDPSRSVPTHSC 680
           H  FS++ +F   HPK  NRD       H+C
Sbjct: 44  HVLFSRIMKFNPAHPKWLNRDRFILSNGHAC 74


>SPBC1773.04 |||flavonol reductase/cinnamoyl-CoA reductase
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/32 (43%), Positives = 15/32 (46%)
 Frame = +1

Query: 67  TSKRANLEPSRSLPHNCLPSCADDCEGNGCIA 162
           T   +NLEP R  PH  L      CE N  IA
Sbjct: 82  TEVHSNLEPPRKDPHELLHIAIQGCE-NALIA 112


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +3

Query: 543 KCRTTFANDYAKFSLHSWFSKLCRFFNRHPKRANRDPSRSVPTHSCDQ 686
           + R+ F NDY   S H+ F K    F +  + +N D      T + +Q
Sbjct: 564 RSRSKFGNDYQSHSKHNLFRK--NSFPKRRRLSNSDTPSETTTPNNEQ 609


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,308
Number of Sequences: 5004
Number of extensions: 58785
Number of successful extensions: 146
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)