Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0872
         (688 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0338 + 7426999-7428322,7428390-7428646                           29   2.6  
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595...    29   3.5  
04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916     29   3.5  
01_01_0437 - 3293624-3294029,3294094-3294212                           29   4.6  
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729...    28   6.0  
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353...    28   6.0  

>09_02_0338 + 7426999-7428322,7428390-7428646
          Length = 526

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 103 LPHNCLPSCADDCEGNGCIA--IFIVRDVY 186
           LPH+C PS +DD   NG     + +VRDV+
Sbjct: 127 LPHSCCPSTSDDGAQNGSAMQNMELVRDVF 156


>10_06_0102 + 10758601-10758948,10759051-10759257,10759349-10759507,
            10759617-10759709,10759913-10760008,10760457-10760724,
            10760805-10761047,10761298-10761422,10761499-10761615,
            10761705-10761779,10761886-10761942,10762035-10762139,
            10762244-10762330,10762790-10763047,10763075-10763263,
            10763418-10763528,10763640-10763729,10763814-10763990,
            10764075-10764152,10764412-10764726,10764819-10765162,
            10765304-10765541,10765631-10765998,10766106-10766316,
            10766622-10766801,10766886-10769045,10769151-10769207
          Length = 2251

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 207  LMKIRYTVDVTNY-ENGDTSVTFAIVGATGQAIVWETTRRFQVRTL 73
            LM I YT   T + E  DTS   A  G  G+ + WE +R F  R L
Sbjct: 2088 LMPI-YTQVATRFAELHDTSARMAAKGVIGKVVDWEESRSFFYRRL 2132


>04_04_1483 - 33907259-33907383,33909295-33909848,33909891-33909916
          Length = 234

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +2

Query: 497 HVEYGHSHSHEHANP 541
           H  +GHSHSH HA P
Sbjct: 98  HHRHGHSHSHGHARP 112


>01_01_0437 - 3293624-3294029,3294094-3294212
          Length = 174

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 468 SVAGIK-ISGSMSNTVTHIRTNTQTRKCRTTFANDYAKFSLHSWFSKLCRFFNRHPKRAN 644
           S+ G+K +  +  + + H   N    +CR   AND   F +    +K+  F+   P++A 
Sbjct: 48  SLEGVKPLPKAEVSVICHDANNRVMVRCRRAVANDNGYFLVELDETKVSDFYMGDPRKAC 107

Query: 645 RDPSRSVPTHSCD 683
               R +P   C+
Sbjct: 108 YVRLRLLPDFECN 120


>09_02_0328 -
           7293547-7293855,7294161-7294274,7294348-7294429,
           7295318-7295401,7296199-7296399,7296516-7296853,
           7296968-7297084
          Length = 414

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
 Frame = -2

Query: 192 YTVDVTNYENGDTSVTFAIVGATGQAIVWETTRRFQVRTL*CLI---KNRHSLENHECSE 22
           Y   VTN   GD +VT+    A   A+ W   + F   T+   I   KN+ + +N     
Sbjct: 52  YRDKVTNEPKGDATVTYEDPHAASAAVEWFNNKDFHGSTIQVHIAESKNKDTYDNSASLN 111

Query: 21  NFA 13
           N A
Sbjct: 112 NSA 114


>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
            3536083-3536226,3536974-3537375,3537499-3537721,
            3537830-3542368,3542480-3542599,3543005-3543038,
            3543922-3544102,3544198-3544815,3545022-3551098,
            3551139-3551304,3551508-3551614,3552056-3552178,
            3553417-3553642
          Length = 5100

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 540  RKCRTTFANDYAKFSLHSWFSKL 608
            R CR +   D++KF+L SW S L
Sbjct: 3917 RACRKSSKGDFSKFALGSWVSDL 3939


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,656,192
Number of Sequences: 37544
Number of extensions: 384426
Number of successful extensions: 994
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 990
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)