Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0872
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.38 
SB_855| Best HMM Match : 7tm_2 (HMM E-Value=5.4e-12)                   30   2.0  
SB_41403| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_37228| Best HMM Match : DUF1048 (HMM E-Value=1.4)                   28   6.2  
SB_54662| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_44544| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1480

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 24/95 (25%), Positives = 40/95 (42%)
 Frame = -1

Query: 607  SLENHECSENFA*SFANVVLHLRVCVFVRM*VTVFDMDPDILMPATDMRANIHTLYECLR 428
            S+  H CS  F   F+ V   +  C+F  + ++V    P      T + A +   Y  +R
Sbjct: 896  SVRKHLCSRGFGFLFSPVCSRVFTCLFACVHLSVRVCSPVRSRVFTCLFACV---YLSVR 952

Query: 427  ACEGPSNIHSQT*RLCKWVRYSICEPVCASSYTCL 323
             C    +    +   C  +   +C PVC+  +TCL
Sbjct: 953  VCSPVCSRAFTSLFACFPMSVRVCSPVCSRVFTCL 987



 Score = 31.5 bits (68), Expect = 0.66
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -1

Query: 445  LYECLRACEGPSNIHSQT*R-LCKWVRYSICEPVCASSYTCL 323
            ++ CL AC  PS     T R  C  +   +C PVC   +TCL
Sbjct: 1264 VFTCLFACVYPSVSRVFTCRSACVHLSVRVCSPVCPRVFTCL 1305


>SB_855| Best HMM Match : 7tm_2 (HMM E-Value=5.4e-12)
          Length = 701

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +1

Query: 145 GNGCIAIFIVRDVYCVAYLHQKKS 216
           GN  + +F++R++Y + +LH+K+S
Sbjct: 478 GNTVVFVFVMREIYRMPHLHEKRS 501


>SB_41403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1415

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 672  VWGHYAKDRGSRALDVC*KTDTAWKTTNAAKTLHNHLQMSSYTC 541
            +W H  K      L+ C  T+    + +AA  +H H  M +Y+C
Sbjct: 1032 LWAHAVKCEEYYGLEYC--TENLECSVHAADEIHRHSSMDNYSC 1073


>SB_37228| Best HMM Match : DUF1048 (HMM E-Value=1.4)
          Length = 964

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 620 KKPTQLGKPRMQRKLCIIICKCRPTLAGLRVRANVSDRIRHGSRYL 483
           + P++    R QR+LC ++C         RV+     + R G RY+
Sbjct: 468 RHPSRKSTSRWQRRLCRVLCDACEGSDYTRVKRKYVKKTRLGDRYI 513


>SB_54662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 551 PTLAGLRVRANVSDRIRHGSRYLNAGH*YARKYSYI 444
           PT  G       +D I +G+ YLN GH Y +   YI
Sbjct: 612 PTFGGGHDIYLANDAINNGNSYLNFGHSYVQIRGYI 647


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,438,749
Number of Sequences: 59808
Number of extensions: 476599
Number of successful extensions: 1181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1045
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1177
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)