Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0872
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25600.1 68415.m03066 potassium channel protein, putative sim...    28   6.7  
At3g12900.1 68416.m01607 oxidoreductase, 2OG-Fe(II) oxygenase fa...    27   8.8  

>At2g25600.1 68415.m03066 potassium channel protein, putative
           similar to potassium channel [Lycopersicon esculentum]
           GI:8980432; member of the 1 pore, 6 transmembrane
           (1P/6TM- Shaker-type) K+ channel family, PMID:11500563;
           Shaker Pollen Inward K+ Channel (SPIK) PMID:11825875
          Length = 888

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = -2

Query: 468 ICAQIFIHCTNVCAHVKGRQTFIRKPSGCANGFGTQFANPFALPPTLV-YECL 313
           + A I  + TN+  HV GR    R     A+GFG +   P  L   +V + CL
Sbjct: 306 LSAYIIGNMTNLVVHVTGRTRKFRDTIQAASGFGQRNNLPVRLQDQMVAHLCL 358


>At3g12900.1 68416.m01607 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to SP|P10967
           1-aminocyclopropane-1-carboxylate oxidase homolog
           (Protein E8) {Lycopersicon esculentum},
           desacetoxyvindoline-4-hydroxylase [Catharanthus roseus]
           GI:2352812; contains Pfam profile PF03171:
           oxidoreductase, 2OG-Fe(II) oxygenase family
          Length = 357

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 308 FVRHS*TSVGGSANGFAN*VPNPFAQPLGLRMNV*RPFTCAQT 436
           FV      V G  +   + VP PF QPL  R+   +  TC  T
Sbjct: 14  FVVREGNGVKGMIDSGLSSVPRPFVQPLSERIPTQKALTCEAT 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,075,606
Number of Sequences: 28952
Number of extensions: 311930
Number of successful extensions: 756
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 754
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)