Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0871
         (717 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000DB6C5F Cluster: PREDICTED: similar to RhoGAPp190...    39   0.11 
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    38   0.33 
UniRef50_UPI0000D554B2 Cluster: PREDICTED: similar to CG32555-PA...    37   0.57 

>UniRef50_UPI0000DB6C5F Cluster: PREDICTED: similar to RhoGAPp190
           CG32555-PA, isoform A; n=1; Apis mellifera|Rep:
           PREDICTED: similar to RhoGAPp190 CG32555-PA, isoform A -
           Apis mellifera
          Length = 1551

 Score = 39.1 bits (87), Expect = 0.11
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = +1

Query: 184 CFLTAAFYTSFFKEVWERKGEIERPSAWSSP 276
           C    AFYT FFKEVWE+K EIE+      P
Sbjct: 873 CQQKTAFYTPFFKEVWEKKPEIEQAFNMEEP 903


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 37.5 bits (83), Expect = 0.33
 Identities = 19/25 (76%), Positives = 20/25 (80%)
 Frame = -2

Query: 92  LMYFLLHK*VDELTAHLVLSGYRSP 18
           L  FLL + VDELTAHLVLSGY SP
Sbjct: 151 LSRFLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_UPI0000D554B2 Cluster: PREDICTED: similar to CG32555-PA,
            isoform A; n=1; Tribolium castaneum|Rep: PREDICTED:
            similar to CG32555-PA, isoform A - Tribolium castaneum
          Length = 1593

 Score = 36.7 bits (81), Expect = 0.57
 Identities = 15/27 (55%), Positives = 19/27 (70%)
 Frame = +1

Query: 199  AFYTSFFKEVWERKGEIERPSAWSSPA 279
            AF+T FFKEVWE+K EIE+      P+
Sbjct: 928  AFFTPFFKEVWEKKPEIEQAFHMEEPS 954


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 659,839,639
Number of Sequences: 1657284
Number of extensions: 12016783
Number of successful extensions: 24818
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24254
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24816
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57851245060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)