Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0871
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0718 + 19005460-19005767,19005854-19006370                       30   1.6  
03_01_0306 + 2391831-2391858,2392831-2392902,2393511-2393698,239...    28   8.5  

>04_03_0718 + 19005460-19005767,19005854-19006370
          Length = 274

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 664 FLEITRVPDA-GNRNAARKPASQYQWLHLGEGTANANLVFKS 542
           F+ +  V DA GNR AA  P     W+  G   A ANLV+ S
Sbjct: 181 FVAVDWVYDAWGNRAAAAAPQEAVAWMWFGRYLAVANLVYFS 222


>03_01_0306 +
           2391831-2391858,2392831-2392902,2393511-2393698,
           2394143-2394203,2394306-2394368,2394396-2394474,
           2394557-2394689,2394727-2394934,2398088-2398143,
           2398252-2400030,2400128-2400281,2400467-2401125
          Length = 1159

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 652 TRVPDAGNRNAARKPASQYQWLHLGEGTANANL 554
           TRVP A N +      SQ +W  L +  A+ NL
Sbjct: 835 TRVPLASNASIVSSDVSQTEWTSLQDDVASENL 867


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,935,587
Number of Sequences: 37544
Number of extensions: 337731
Number of successful extensions: 637
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)