Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0871
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.2  
SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)               28   6.6  
SB_20708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_52414| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_7780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1309

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 109  LCNKINT*YSSVETRRLGGVVVMCDCFLTAAFYTSFFKEVWERKGEIE 252
            LC K  T    ++ + +  +    + F     + SFF  VW +KGE E
Sbjct: 920  LCAKFQTTSPRLQNQDISSIK---ELFFQGGLFASFFNRVWNKKGESE 964


>SB_11721| Best HMM Match : Peptidase_C12 (HMM E-Value=0)
          Length = 537

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 272 LLQAEGRSISPLRSHTSLKNDV*NAAVRKQSHITTTPPSRR 150
           +L  EG     +  HTSLK  +  +  +K+SHI    P +R
Sbjct: 491 MLAQEGHMGQLVEQHTSLKRRLAQSMAQKRSHIKVKRPYKR 531


>SB_20708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +1

Query: 43  RWAVSSSTHLCNKKYI-KFPQTLLCNKINT*YSSVETRRLGGVVVMC 180
           RW+ +     C   Y+ + P+T  CN+I    S+ ET R G    +C
Sbjct: 90  RWSNNIKVRNCGGFYVYQLPKTPACNQIKYALSTTETERNGTENEVC 136


>SB_52414| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 446

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 662 FGNNESSRRGKPKCCPKTSF 603
           +GN + S  GK KCC + SF
Sbjct: 178 YGNPQPSTEGKSKCCGRISF 197


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,400,170
Number of Sequences: 59808
Number of extensions: 383813
Number of successful extensions: 1041
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)