Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0871
         (717 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY121666-1|AAM51993.1| 1561|Drosophila melanogaster RE10888p pro...    29   6.3  
AF387518-1|AAL01872.1| 1564|Drosophila melanogaster Rho-GTPase a...    29   6.3  
AE014298-2594|AAN09591.1| 1561|Drosophila melanogaster CG32555-P...    29   6.3  
AE014298-2593|AAF48748.2| 1561|Drosophila melanogaster CG32555-P...    29   6.3  
AE014298-2592|AAF48749.2| 1561|Drosophila melanogaster CG32555-P...    29   6.3  

>AY121666-1|AAM51993.1| 1561|Drosophila melanogaster RE10888p protein.
          Length = 1561

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 109  LCNKINT*YSSVETRRLGGVVVM-CDCFLTAAFYTSFFKEVWERKGEIE 252
            +C  + T  ++V  R  G  +    D ++  AFY  F K  W+ K E+E
Sbjct: 880  ICQFLITEGNAVADRFKGSFMTFSADQYVKFAFYNPFLKTAWDNKYEVE 928


>AF387518-1|AAL01872.1| 1564|Drosophila melanogaster Rho-GTPase
            activating protein p190 protein.
          Length = 1564

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 109  LCNKINT*YSSVETRRLGGVVVM-CDCFLTAAFYTSFFKEVWERKGEIE 252
            +C  + T  ++V  R  G  +    D ++  AFY  F K  W+ K E+E
Sbjct: 880  ICQFLITEGNAVADRFKGSFMTFSADQYVKFAFYNPFLKTAWDNKYEVE 928


>AE014298-2594|AAN09591.1| 1561|Drosophila melanogaster CG32555-PC,
            isoform C protein.
          Length = 1561

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 109  LCNKINT*YSSVETRRLGGVVVM-CDCFLTAAFYTSFFKEVWERKGEIE 252
            +C  + T  ++V  R  G  +    D ++  AFY  F K  W+ K E+E
Sbjct: 880  ICQFLITEGNAVADRFKGSFMTFSADQYVKFAFYNPFLKTAWDNKYEVE 928


>AE014298-2593|AAF48748.2| 1561|Drosophila melanogaster CG32555-PB,
            isoform B protein.
          Length = 1561

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 109  LCNKINT*YSSVETRRLGGVVVM-CDCFLTAAFYTSFFKEVWERKGEIE 252
            +C  + T  ++V  R  G  +    D ++  AFY  F K  W+ K E+E
Sbjct: 880  ICQFLITEGNAVADRFKGSFMTFSADQYVKFAFYNPFLKTAWDNKYEVE 928


>AE014298-2592|AAF48749.2| 1561|Drosophila melanogaster CG32555-PA,
            isoform A protein.
          Length = 1561

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 109  LCNKINT*YSSVETRRLGGVVVM-CDCFLTAAFYTSFFKEVWERKGEIE 252
            +C  + T  ++V  R  G  +    D ++  AFY  F K  W+ K E+E
Sbjct: 880  ICQFLITEGNAVADRFKGSFMTFSADQYVKFAFYNPFLKTAWDNKYEVE 928


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,744,517
Number of Sequences: 53049
Number of extensions: 570291
Number of successful extensions: 1049
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)