Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0871
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    32   0.36 
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    32   0.36 
AL132948-35|CAC51060.2|  887|Caenorhabditis elegans Hypothetical...    29   2.5  
U80026-1|AAC25844.1|  355|Caenorhabditis elegans Fucosyl transfe...    29   4.4  
U80027-14|AAC48127.1|  199|Caenorhabditis elegans Hypothetical p...    28   5.8  

>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +1

Query: 163  GVVVMCDCFLT--AAFYTSFFKEVWERKGEIERPSAWSSPAPRTTCP 297
            G   +CDC  T   + Y  F        GE   P+ W+ P  +T+CP
Sbjct: 1027 GCNAICDCTTTNDTSMYNPFVARCDHVTGECRCPAGWTGPDCQTSCP 1073


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +1

Query: 163  GVVVMCDCFLT--AAFYTSFFKEVWERKGEIERPSAWSSPAPRTTCP 297
            G   +CDC  T   + Y  F        GE   P+ W+ P  +T+CP
Sbjct: 1027 GCNAICDCTTTNDTSMYNPFVARCDHVTGECRCPAGWTGPDCQTSCP 1073


>AL132948-35|CAC51060.2|  887|Caenorhabditis elegans Hypothetical
           protein Y39B6A.47 protein.
          Length = 887

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +2

Query: 665 ITTEFFRKLFHPFL 706
           +T E+FR+LFHPFL
Sbjct: 279 VTDEYFRRLFHPFL 292


>U80026-1|AAC25844.1|  355|Caenorhabditis elegans Fucosyl
           transferase protein 2 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 487 ISIVFFMIDVLLVARRPFSSGQVGEDIYCLKYKFEDQ 377
           I I+F +  V  +  R ++  Q+G +I C+K+K ++Q
Sbjct: 22  IVIIFIIFIVNRMGPRNYNYKQIGTEINCVKHKVDEQ 58


>U80027-14|AAC48127.1|  199|Caenorhabditis elegans Hypothetical
           protein T28A11.19 protein.
          Length = 199

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = -1

Query: 648 EFPTRETEMLPENQLHNINGCIWERG-LLMRILFL 547
           E   R     PE     + GC+WE G  L ++LFL
Sbjct: 29  ELERRRIRNCPEVTFKRMTGCVWEFGRFLKKVLFL 63


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,233,901
Number of Sequences: 27780
Number of extensions: 295300
Number of successful extensions: 578
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 578
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)