Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0869
         (686 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O24770 Cluster: Oxetanocin A biosynthetic enzyme; n=1; ...    34   3.7  
UniRef50_Q55EI8 Cluster: Filamin/ABP280 repeat-containing protei...    33   4.9  
UniRef50_A5K6F7 Cluster: Transporter, putative; n=1; Plasmodium ...    33   6.5  
UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    33   6.5  

>UniRef50_O24770 Cluster: Oxetanocin A biosynthetic enzyme; n=1;
           Bacillus megaterium|Rep: Oxetanocin A biosynthetic
           enzyme - Bacillus megaterium
          Length = 744

 Score = 33.9 bits (74), Expect = 3.7
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = +2

Query: 167 HLSNKKTKKFTSYMRNSIKRSMIIPWSGLIEFDKRKSVVTLILND 301
           H + K      SYM  S++  M  P+S +++  +RK  V LI+ND
Sbjct: 527 HKTGKPVYTIVSYMLASMEILMNTPYSRMVQLTERKEEVNLIMND 571


>UniRef50_Q55EI8 Cluster: Filamin/ABP280 repeat-containing protein;
            n=1; Dictyostelium discoideum AX4|Rep: Filamin/ABP280
            repeat-containing protein - Dictyostelium discoideum AX4
          Length = 1385

 Score = 33.5 bits (73), Expect = 4.9
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = +2

Query: 497  HSRNETSNNKRKTIIVN--SKVNHNKPCNFSNFNVREPTAL*CKSIPGFFGLTS 652
            +S N  +NN    I +N  + +N+NK  N +  N + P +  CKS P F  L S
Sbjct: 1328 NSNNSINNNNNNGIAINYTNSINNNKNSNNNTSNTKYPISK-CKSNPSFEALKS 1380


>UniRef50_A5K6F7 Cluster: Transporter, putative; n=1; Plasmodium
           vivax|Rep: Transporter, putative - Plasmodium vivax
          Length = 497

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 461 VIKIIVYRR*MYHSRNETSNNKRKTIIVNSKVNHNKPCNFSNFNVR 598
           + +I+ Y   +  +R +T NN+  T  +NS+  H K C+F  +NVR
Sbjct: 428 IAQIVSYPFLVLRTRMQTLNNEIATNYLNSERKHIKSCSFILYNVR 473


>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 33.1 bits (72), Expect = 6.5
 Identities = 13/17 (76%), Positives = 14/17 (82%)
 Frame = -2

Query: 121 PIDIYDVNAPPTLRYKF 71
           P  +YDVNAPPT RYKF
Sbjct: 175 PRHLYDVNAPPTSRYKF 191


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 590,756,212
Number of Sequences: 1657284
Number of extensions: 10567985
Number of successful extensions: 22495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22251
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 53719013270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)