Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0869
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    26   0.33 
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    25   0.44 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   2.3  
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     22   4.1  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   4.1  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   7.2  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +2

Query: 11  SSNAFRFEGWGSRCNYSEILELIS*GGWCIYVIDVYGLR*LH-NTRW-AVSSSTHLSNK 181
           + N+ ++ G      Y+EI+EL   GGW +   D      ++   +W A  S   +SNK
Sbjct: 284 AGNSGKYTGEAGMLGYNEIVELQKEGGWKVVWDDTQKNTHMYKGDQWVAFDSPKAISNK 342


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 140 TRWAVSSSTHLSNKKTKKFTSYMRNSIKR 226
           TR + SSSTH S+++T       RNS K+
Sbjct: 384 TRKSTSSSTHTSSQQTSDSFLSKRNSEKK 412


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 17  NAFRFEGWGSRCNYSEILELIS*GGW 94
           +A R+ G      Y+EI+E  + GGW
Sbjct: 290 DAGRYTGERGMMGYNEIVEAQNAGGW 315


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 274 FSLIKFNQTRPGY 236
           F++I+F  T PGY
Sbjct: 587 FTIIRFKATNPGY 599


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +2

Query: 197 TSYMRNSIKRSMIIPW-SGLIEFDKRKSVVTLILN 298
           T ++  SI  +  I + + LIEFD +   V+LI+N
Sbjct: 90  TVWINTSINGTKFIEFINKLIEFDVKLQNVSLIIN 124


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/34 (20%), Positives = 18/34 (52%)
 Frame = +2

Query: 506 NETSNNKRKTIIVNSKVNHNKPCNFSNFNVREPT 607
           N+T+ N  +  +  ++  +N P  + ++ +  PT
Sbjct: 160 NDTTGNSGEGSLQENRYYNNSPDQYQSYQILLPT 193


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,080
Number of Sequences: 336
Number of extensions: 3000
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)