Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0869
         (686 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0459 + 17776421-17776498,17776608-17776668,17776977-177769...    28   8.0  
02_03_0012 - 13940583-13940853,13942281-13942509,13945275-139454...    28   8.0  

>09_04_0459 +
           17776421-17776498,17776608-17776668,17776977-17776996,
           17777067-17777129
          Length = 73

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 131 LHNTRWAVSSSTHLSNKKTKKFTSYMRNSI 220
           L N +W+   S HLS KK     S ++NS+
Sbjct: 27  LPNKKWSTMQSAHLSMKKFGVLKSELKNSL 56


>02_03_0012 -
           13940583-13940853,13942281-13942509,13945275-13945476,
           13945961-13946278,13947321-13947419
          Length = 372

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 140 TRWAVSSSTHLSNKKTKKFTSYMRN 214
           +RWA+   T +   + K FT++MRN
Sbjct: 58  SRWAIMQETRVEYFRGKDFTTFMRN 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,595,018
Number of Sequences: 37544
Number of extensions: 279917
Number of successful extensions: 345
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)