Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0869
         (686 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)                     28   6.2  
SB_33897| Best HMM Match : DNA_pack_N (HMM E-Value=6)                  28   8.1  

>SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)
          Length = 465

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +2

Query: 38  WGSRCNYSEILELIS*GGWCIYVID 112
           WGS C +S+++ + + GG+ +Y +D
Sbjct: 127 WGSICQWSQMIRVKNCGGFYVYELD 151


>SB_33897| Best HMM Match : DNA_pack_N (HMM E-Value=6)
          Length = 231

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +2

Query: 131 LHNTRWAVSSSTHLSNKKTKKFTSYMRNSIKRSMI--IPWSGLIEFDKRKSVVTLIL 295
           L N++    + THL +  TKK TS  +N+I + +I    W     F  R  ++ +++
Sbjct: 32  LLNSKNQSVAKTHLQSLCTKKLTSTSKNAISQDIIYKFRWIKTFRFFSRVKILHVLI 88


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,435,457
Number of Sequences: 59808
Number of extensions: 337688
Number of successful extensions: 610
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)