Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0868
(690 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P0AG33 Cluster: Transcription termination factor rho; n... 173 3e-42
UniRef50_Q8F7C5 Cluster: Transcription termination factor rho; n... 143 4e-33
UniRef50_Q92HL2 Cluster: Transcription termination factor rho; n... 141 2e-32
UniRef50_A6DIN5 Cluster: Transcription termination factor Rho; n... 139 7e-32
UniRef50_O83281 Cluster: Transcription termination factor rho; n... 132 6e-30
UniRef50_A7M2K2 Cluster: Putative uncharacterized protein; n=1; ... 124 3e-27
UniRef50_O67031 Cluster: Transcription termination factor rho; n... 124 3e-27
UniRef50_Q8NR58 Cluster: Transcription termination factor; n=3; ... 123 4e-27
UniRef50_P52157 Cluster: Transcription termination factor rho; n... 123 4e-27
UniRef50_P45835 Cluster: Transcription termination factor rho; n... 122 6e-27
UniRef50_A7H9J7 Cluster: H+transporting two-sector ATPase alpha/... 118 1e-25
UniRef50_Q2S0E2 Cluster: Transcription termination factor Rho; n... 116 4e-25
UniRef50_Q1FJZ5 Cluster: Transcription termination factor Rho; n... 116 5e-25
UniRef50_Q1AVG2 Cluster: Transcription termination factor Rho; n... 116 5e-25
UniRef50_Q9FC33 Cluster: Putative transcription terminator facto... 114 2e-24
UniRef50_Q8XIB4 Cluster: Transcription terminator Rho factor; n=... 111 2e-23
UniRef50_A6CBM4 Cluster: Transcription termination factor Rho; n... 107 3e-22
UniRef50_A7CZI2 Cluster: H+transporting two-sector ATPase alpha/... 105 1e-21
UniRef50_A3ZQF8 Cluster: Transcription termination factor Rho; n... 103 5e-21
UniRef50_Q5SJE9 Cluster: Transcription termination factor Rho; n... 102 7e-21
UniRef50_P76102 Cluster: Uncharacterized protein ydcM; n=42; Pro... 99 5e-20
UniRef50_O80301 Cluster: ORF348; n=9; root|Rep: ORF348 - Bacteri... 94 3e-18
UniRef50_Q2S040 Cluster: Transcription termination factor rho; n... 92 1e-17
UniRef50_A5TX87 Cluster: Transcription termination factor Rho; n... 90 5e-17
UniRef50_A1FWK2 Cluster: Putative uncharacterized protein precur... 87 5e-16
UniRef50_A6VWI3 Cluster: H+transporting two-sector ATPase alpha/... 82 1e-14
UniRef50_A0IKN4 Cluster: Transposase, IS605 OrfB; n=1; Serratia ... 81 3e-14
UniRef50_A0TJ39 Cluster: Putative uncharacterized protein; n=4; ... 78 2e-13
UniRef50_Q83MV6 Cluster: Transcription termination factor Rho; n... 76 7e-13
UniRef50_UPI00015B8A54 Cluster: UPI00015B8A54 related cluster; n... 74 4e-12
UniRef50_A3TXU1 Cluster: Putative uncharacterized protein; n=4; ... 73 5e-12
UniRef50_A7CGE5 Cluster: Putative uncharacterized protein; n=1; ... 71 4e-11
UniRef50_A3ZQQ3 Cluster: Putative uncharacterized protein; n=1; ... 67 4e-10
UniRef50_P21865 Cluster: Sensor protein kdpD; n=41; Proteobacter... 63 7e-09
UniRef50_A1VIC7 Cluster: Transposase, IS605 OrfB family; n=3; Po... 60 5e-08
UniRef50_Q2JIC4 Cluster: ISSoc9, transposase; n=44; Bacteria|Rep... 56 1e-06
UniRef50_Q3IEZ6 Cluster: Putative transposase; n=1; Pseudoaltero... 54 2e-06
UniRef50_Q7W533 Cluster: Sensor protein; n=5; Burkholderiales|Re... 49 1e-04
UniRef50_Q9PFX1 Cluster: Transposase OrfB; n=3; Xylella fastidio... 47 4e-04
UniRef50_Q141X8 Cluster: ATPase FliI/YscN; n=1; Burkholderia xen... 47 4e-04
UniRef50_Q1J2W3 Cluster: Putative transposase, IS891/IS1136/IS13... 46 9e-04
UniRef50_Q8XU09 Cluster: Sensor protein; n=8; Burkholderiaceae|R... 46 0.001
UniRef50_Q3JBU5 Cluster: Transposase, IS605 OrfB; n=2; Nitrosoco... 46 0.001
UniRef50_Q5KVX1 Cluster: Transposase; n=5; Firmicutes|Rep: Trans... 45 0.002
UniRef50_Q5ULQ4 Cluster: Transposase; n=1; Lactobacillus phage L... 45 0.002
UniRef50_Q7NXN0 Cluster: Sensor protein; n=2; Bacteria|Rep: Sens... 44 0.003
UniRef50_UPI000018F643 Cluster: putative transposase; n=1; Rhodo... 44 0.004
UniRef50_A5CZ86 Cluster: Transposase and inactivated derivatives... 44 0.004
UniRef50_A4TG11 Cluster: Transposase, IS605 OrfB family; n=4; Ac... 44 0.005
UniRef50_A4SZG6 Cluster: Sensor protein; n=1; Polynucleobacter s... 44 0.005
UniRef50_O67531 Cluster: Flagellum-specific ATP synthase; n=2; A... 43 0.006
UniRef50_Q74AA7 Cluster: Sensor protein; n=7; cellular organisms... 43 0.008
UniRef50_A5WGC6 Cluster: Transposase, IS605 OrfB family; n=19; P... 43 0.008
UniRef50_Q2SEY6 Cluster: Flagellum-specific ATP synthase; n=1; H... 42 0.011
UniRef50_Q2JPM6 Cluster: ISSoc8, transposase; n=14; Cyanobacteri... 42 0.011
UniRef50_A4J2W1 Cluster: Transposase, IS605 OrfB family; n=1; De... 42 0.011
UniRef50_A1KA55 Cluster: Sensor protein; n=1; Azoarcus sp. BH72|... 42 0.011
UniRef50_A0YZ04 Cluster: Transposase; n=4; Cyanobacteria|Rep: Tr... 42 0.011
UniRef50_Q7A2A0 Cluster: Transposase; n=22; root|Rep: Transposas... 42 0.014
UniRef50_Q0SV01 Cluster: ISCpe2, transposase orfB; n=24; Clostri... 42 0.014
UniRef50_Q3J9P3 Cluster: Transposase; n=1; Nitrosococcus oceani ... 42 0.019
UniRef50_Q119K5 Cluster: Transposase, IS605 OrfB family; n=5; Os... 42 0.019
UniRef50_A4XGL7 Cluster: Transposase, IS605 OrfB family; n=4; Ba... 42 0.019
UniRef50_Q9WXY8 Cluster: Transposase, putative; n=3; Thermotoga|... 41 0.025
UniRef50_O05528 Cluster: Flagellum-specific ATP synthase; n=26; ... 41 0.025
UniRef50_Q47A44 Cluster: Sensor protein; n=1; Dechloromonas arom... 41 0.033
UniRef50_A4TFZ8 Cluster: Transposase, IS605 OrfB family; n=1; My... 41 0.033
UniRef50_P52607 Cluster: Flagellum-specific ATP synthase; n=3; B... 41 0.033
UniRef50_Q2CGJ3 Cluster: Flagellum-specific ATP synthase; n=1; O... 40 0.043
UniRef50_Q0EZL2 Cluster: Flagellum-specific ATP synthase; n=1; M... 40 0.043
UniRef50_A3JHU7 Cluster: Putative uncharacterized protein; n=1; ... 40 0.043
UniRef50_Q7UIJ0 Cluster: Flagellum-specific ATP synthase; n=3; P... 40 0.057
UniRef50_Q8VNS1 Cluster: EscN protein; n=11; Enterobacteriaceae|... 40 0.057
UniRef50_Q2JT81 Cluster: ISSoc7, transposase; n=17; root|Rep: IS... 40 0.076
UniRef50_Q2JIA2 Cluster: ISSoc1, transposase; n=49; Chroococcale... 40 0.076
UniRef50_A6Q2N1 Cluster: Flagellar-specific ATP synthase FliI; n... 40 0.076
UniRef50_Q9HSZ6 Cluster: Putative uncharacterized protein; n=2; ... 40 0.076
UniRef50_P55717 Cluster: Probable ATP synthase y4yI; n=27; Bacte... 40 0.076
UniRef50_Q8DG92 Cluster: Tll2431 protein; n=21; Cyanobacteria|Re... 39 0.13
UniRef50_Q1IZV4 Cluster: Transposase, IS605 OrfB; n=4; Bacteria|... 39 0.13
UniRef50_A7CYE2 Cluster: Flagellar protein export ATPase FliI; n... 39 0.13
UniRef50_A2W3Z6 Cluster: ATPase FliI/YscN; n=1; Burkholderia cen... 39 0.13
UniRef50_A1EBU5 Cluster: SctN; n=1; Lysobacter enzymogenes|Rep: ... 39 0.13
UniRef50_Q898S9 Cluster: Transposase; n=11; root|Rep: Transposas... 38 0.18
UniRef50_Q2JSB2 Cluster: ISSoc1, transposase, truncation; n=1; S... 38 0.18
UniRef50_A0VDN8 Cluster: Sensor protein; n=3; Proteobacteria|Rep... 38 0.18
UniRef50_Q8ZN02 Cluster: Gifsy-1 prophage protein; n=34; root|Re... 38 0.23
UniRef50_Q8KKY7 Cluster: Type III secretion system ATP synthase ... 38 0.23
UniRef50_Q5FHZ3 Cluster: Transposase; n=1; Lactobacillus acidoph... 38 0.23
UniRef50_Q392X5 Cluster: Sensor protein; n=1; Burkholderia sp. 3... 38 0.23
UniRef50_Q6T8F4 Cluster: Putative IS1341 element transposase; n=... 38 0.23
UniRef50_A5VI23 Cluster: Transposase, IS605 OrfB family; n=6; La... 38 0.23
UniRef50_A3IV11 Cluster: ISSoc1, transposase; n=2; Cyanothece sp... 38 0.23
UniRef50_Q8PZB5 Cluster: Transposase; n=2; Euryarchaeota|Rep: Tr... 38 0.23
UniRef50_Q67K17 Cluster: Flagellar-specific ATP synthase; n=1; S... 38 0.31
UniRef50_Q2S638 Cluster: IS605 family transposase orfB; n=1; Sal... 38 0.31
UniRef50_Q1WRF3 Cluster: Transposase ISLasa12, IS607 family; n=1... 38 0.31
UniRef50_Q5V3V1 Cluster: Transposase; n=7; Halobacteriaceae|Rep:... 38 0.31
UniRef50_A4YGW8 Cluster: Transposase, IS605 OrfB family; n=1; Me... 38 0.31
UniRef50_Q2JBK1 Cluster: Transposase, IS605 OrfB; n=1; Frankia s... 37 0.40
UniRef50_Q2J7W8 Cluster: Transposase, IS605 OrfB; n=10; Actinomy... 37 0.40
UniRef50_A7AXN0 Cluster: Putative uncharacterized protein; n=1; ... 37 0.40
UniRef50_A0GWD0 Cluster: Transposase, IS605 OrfB; n=1; Chlorofle... 37 0.40
UniRef50_P74857 Cluster: Probable secretion system apparatus ATP... 37 0.40
UniRef50_Q63VS0 Cluster: Sensor protein; n=35; Bacteria|Rep: Sen... 37 0.53
UniRef50_Q3J7Q7 Cluster: Transposase; n=2; Bacteria|Rep: Transpo... 37 0.53
UniRef50_Q4BVL7 Cluster: Transposase, IS605 OrfB; n=1; Crocospha... 37 0.53
UniRef50_A4XG02 Cluster: Transposase, IS605 OrfB family; n=2; Fi... 37 0.53
UniRef50_A1ZDT4 Cluster: Transposase, OrfB; n=4; Microscilla mar... 37 0.53
UniRef50_A1VS43 Cluster: Transposase, IS605 OrfB; n=2; Proteobac... 37 0.53
UniRef50_Q97A87 Cluster: Putative uncharacterized protein TVG095... 37 0.53
UniRef50_A7I8W2 Cluster: Transposase, IS605 OrfB family; n=1; Ca... 37 0.53
UniRef50_Q8F319 Cluster: Flagellum-specific ATP synthase fliI; n... 36 0.71
UniRef50_Q4MP02 Cluster: Transposase, putative; n=3; Bacillus ce... 36 0.71
UniRef50_Q4C0Y0 Cluster: Transposase, IS605 OrfB; n=8; Cyanobact... 36 0.71
UniRef50_A6GN32 Cluster: Type III secretion protein; n=1; Limnob... 36 0.71
UniRef50_A0YME8 Cluster: Transposase; n=7; Lyngbya sp. PCC 8106|... 36 0.71
UniRef50_A7SJB7 Cluster: Predicted protein; n=2; Nematostella ve... 36 0.71
UniRef50_P0A1B9 Cluster: Probable ATP synthase spaL; n=32; Prote... 36 0.71
UniRef50_Q8R9Z1 Cluster: Flagellar biosynthesis/type III secreto... 36 0.93
UniRef50_A7HF03 Cluster: GAF sensor signal transduction histidin... 36 0.93
UniRef50_A3IZ05 Cluster: Transposase; n=5; Chroococcales|Rep: Tr... 36 0.93
UniRef50_Q97V25 Cluster: Transposase ISC1316; n=24; root|Rep: Tr... 36 0.93
UniRef50_A7D6X9 Cluster: Transposase, IS605 OrfB family; n=1; Ha... 36 0.93
UniRef50_Q81SH1 Cluster: Flagellum-specific ATP synthase, putati... 36 1.2
UniRef50_A3EVE7 Cluster: Transposase; n=1; Leptospirillum sp. Gr... 36 1.2
UniRef50_Q8PYT5 Cluster: Transposase; n=3; Methanosarcinaceae|Re... 36 1.2
UniRef50_A6UTR1 Cluster: Transposase, IS605 OrfB family; n=6; Eu... 36 1.2
UniRef50_Q9RXX7 Cluster: Transposase, putative; n=4; Bacteria|Re... 35 1.6
UniRef50_Q5KY50 Cluster: Transposase; n=28; Bacillaceae|Rep: Tra... 35 1.6
UniRef50_Q3J925 Cluster: Transposase, IS605 OrfB; n=1; Nitrosoco... 35 1.6
UniRef50_Q6VRS9 Cluster: Transposase B-like protein; n=9; Helico... 35 1.6
UniRef50_Q1J2Y7 Cluster: Transposase, IS605 OrfB; n=1; Deinococc... 35 1.6
UniRef50_A5D0F3 Cluster: Flagellar biosynthesis/type III secreto... 35 1.6
UniRef50_A3SFS3 Cluster: Flagellum-specific ATP synthase; n=2; S... 35 1.6
UniRef50_A1K9B0 Cluster: Sensor protein; n=1; Azoarcus sp. BH72|... 35 1.6
UniRef50_A0YVR7 Cluster: Transposase; n=3; Cyanobacteria|Rep: Tr... 35 1.6
UniRef50_Q3IRT6 Cluster: IS1341-type transposase; n=2; Natronomo... 35 1.6
UniRef50_Q4BY36 Cluster: Transposase, IS605 OrfB; n=2; Crocospha... 35 2.2
UniRef50_Q46219 Cluster: IS1136 DNA; n=12; Bacteria|Rep: IS1136 ... 35 2.2
UniRef50_Q3W754 Cluster: Transposase (Probable), IS891/IS1136/IS... 35 2.2
UniRef50_A7BXB2 Cluster: Transposase; n=1; Beggiatoa sp. PS|Rep:... 35 2.2
UniRef50_Q22T03 Cluster: DEAD/DEAH box helicase family protein; ... 35 2.2
UniRef50_Q8PRS0 Cluster: Transposase; n=2; cellular organisms|Re... 35 2.2
UniRef50_A3H5U5 Cluster: Transposase, IS605 OrfB family; n=13; r... 35 2.2
UniRef50_UPI0000E1FBFC Cluster: PREDICTED: hypothetical protein;... 34 2.9
UniRef50_Q3WA72 Cluster: Transposase (Probable), IS891/IS1136/IS... 34 2.9
UniRef50_A6AXF1 Cluster: VcsN2; n=7; Vibrio|Rep: VcsN2 - Vibrio ... 34 2.9
UniRef50_P23445 Cluster: Flagellum-specific ATP synthase; n=18; ... 34 2.9
UniRef50_Q74KQ9 Cluster: Transposase; n=2; Lactobacillus|Rep: Tr... 34 3.8
UniRef50_Q6A4I0 Cluster: Putative uncharacterized protein ORFB; ... 34 3.8
UniRef50_Q3JDS4 Cluster: Transposase; n=11; Nitrosococcus oceani... 33 5.0
UniRef50_Q313A0 Cluster: Nitroreductase family protein; n=1; Des... 33 5.0
UniRef50_Q9HKW8 Cluster: Transposase related protein; n=2; Therm... 33 5.0
UniRef50_Q24509 Cluster: Syntaxin-5; n=8; Eumetazoa|Rep: Syntaxi... 33 5.0
UniRef50_Q6KBZ2 Cluster: Sensor protein; n=1; Alicyclobacillus a... 33 6.6
UniRef50_Q4VR80 Cluster: Transposase; n=14; Campylobacterales|Re... 33 6.6
UniRef50_Q1VMR6 Cluster: Putative uncharacterized protein; n=1; ... 33 6.6
UniRef50_A1SEP6 Cluster: ATPase, FliI/YscN family; n=10; Bacteri... 33 6.6
UniRef50_A0ZI33 Cluster: Transposase; n=2; Cyanobacteria|Rep: Tr... 33 6.6
UniRef50_A0H2C9 Cluster: Transposase IS200-like; n=1; Chloroflex... 33 6.6
UniRef50_Q3IM28 Cluster: IS1341-type transposase; n=4; Halobacte... 33 6.6
UniRef50_A3CUW2 Cluster: Transcriptional regulator, TrmB; n=1; M... 33 6.6
UniRef50_Q5KY43 Cluster: Transposase; n=6; Geobacillus kaustophi... 33 8.7
UniRef50_Q1GNY4 Cluster: ATPase FliI/YscN; n=6; Bacteria|Rep: AT... 33 8.7
UniRef50_O31034 Cluster: Hypothetical 21 kDa protein; n=1; Mycob... 33 8.7
UniRef50_A7NKZ2 Cluster: Transposase, IS605 OrfB family; n=2; Ro... 33 8.7
UniRef50_A5EBL0 Cluster: Putative uncharacterized protein; n=1; ... 33 8.7
UniRef50_A4S5T7 Cluster: Predicted protein; n=2; Ostreococcus|Re... 33 8.7
UniRef50_Q8TMG6 Cluster: Transposase; n=1; Methanosarcina acetiv... 33 8.7
UniRef50_Q9P7Q7 Cluster: Peroxide stress-activated histidine kin... 33 8.7
UniRef50_Q32M07 Cluster: Putative adenylate kinase-like protein ... 33 8.7
>UniRef50_P0AG33 Cluster: Transcription termination factor rho;
n=127; Bacteria|Rep: Transcription termination factor
rho - Shigella flexneri
Length = 419
Score = 173 bits (421), Expect = 3e-42
Identities = 85/86 (98%), Positives = 86/86 (100%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 180
AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK
Sbjct: 192 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 251
Query: 181 RLVEHKKDVIILLDSITRLARAYNTL 258
RLVEHKKDVIILLDSITRLARAYNT+
Sbjct: 252 RLVEHKKDVIILLDSITRLARAYNTV 277
Score = 92.7 bits (220), Expect = 8e-18
Identities = 44/45 (97%), Positives = 45/45 (100%)
Frame = +3
Query: 255 VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATAL+
Sbjct: 277 VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALI 321
>UniRef50_Q8F7C5 Cluster: Transcription termination factor rho;
n=54; cellular organisms|Rep: Transcription termination
factor rho - Leptospira interrogans
Length = 482
Score = 143 bits (346), Expect = 4e-33
Identities = 69/84 (82%), Positives = 76/84 (90%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 180
A +I NHP+C L+VLLIDERPEEVT+M R V+GEVV+STFDEPA RHVQVAEMVIEKAK
Sbjct: 255 ANAITSNHPECSLIVLLIDERPEEVTDMARHVRGEVVSSTFDEPAQRHVQVAEMVIEKAK 314
Query: 181 RLVEHKKDVIILLDSITRLARAYN 252
RLVEH KDV+ILLDSITRLARAYN
Sbjct: 315 RLVEHGKDVVILLDSITRLARAYN 338
Score = 85.8 bits (203), Expect = 9e-16
Identities = 37/45 (82%), Positives = 44/45 (97%)
Frame = +3
Query: 255 VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
V+P SGK+L+GGVD+NALH+PKRFFGAARN+EEGGSLTIIATAL+
Sbjct: 340 VIPTSGKILSGGVDSNALHKPKRFFGAARNIEEGGSLTIIATALI 384
>UniRef50_Q92HL2 Cluster: Transcription termination factor rho;
n=164; cellular organisms|Rep: Transcription termination
factor rho - Rickettsia conorii
Length = 458
Score = 141 bits (341), Expect = 2e-32
Identities = 67/86 (77%), Positives = 80/86 (93%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 180
A +I N+P+ L+VLLIDERPEEVT+MQR V+GEVV+STFDEPASRHVQ+AEMVI+KAK
Sbjct: 224 AHAITTNNPEVFLIVLLIDERPEEVTDMQRSVRGEVVSSTFDEPASRHVQLAEMVIKKAK 283
Query: 181 RLVEHKKDVIILLDSITRLARAYNTL 258
RLVEHKKDV+IL+D+ITRLARAYNT+
Sbjct: 284 RLVEHKKDVVILVDAITRLARAYNTV 309
Score = 84.2 bits (199), Expect = 3e-15
Identities = 39/45 (86%), Positives = 42/45 (93%)
Frame = +3
Query: 255 VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
VVP+SGKVLTGGVDANAL RPKRFFGAARN+E GGSLTII TAL+
Sbjct: 309 VVPSSGKVLTGGVDANALQRPKRFFGAARNIENGGSLTIIGTALI 353
>UniRef50_A6DIN5 Cluster: Transcription termination factor Rho; n=1;
Lentisphaera araneosa HTCC2155|Rep: Transcription
termination factor Rho - Lentisphaera araneosa HTCC2155
Length = 613
Score = 139 bits (336), Expect = 7e-32
Identities = 67/86 (77%), Positives = 79/86 (91%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 180
A SIA N+PD L+VLLIDERPEEVT+M+R VKGEV++STFDEP +RHVQVAEMVIEKAK
Sbjct: 387 ANSIATNNPDFHLIVLLIDERPEEVTDMKRNVKGEVISSTFDEPPTRHVQVAEMVIEKAK 446
Query: 181 RLVEHKKDVIILLDSITRLARAYNTL 258
R+VEH K+V++LLDSITRLARAYNT+
Sbjct: 447 RMVEHGKNVVVLLDSITRLARAYNTV 472
Score = 79.4 bits (187), Expect = 8e-14
Identities = 35/45 (77%), Positives = 42/45 (93%)
Frame = +3
Query: 255 VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
V P SGK+L+GGVDANALH+PKRFFGAAR ++EGGSLTI+ATAL+
Sbjct: 472 VQPHSGKILSGGVDANALHKPKRFFGAARRIQEGGSLTILATALV 516
>UniRef50_O83281 Cluster: Transcription termination factor rho; n=5;
Bacteria|Rep: Transcription termination factor rho -
Treponema pallidum
Length = 519
Score = 132 bits (320), Expect = 6e-30
Identities = 61/84 (72%), Positives = 75/84 (89%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 180
A +I NHP+ L+VLLIDERPEEVT+M+R V EV++STFDE A+RHVQ+AE+V+E+AK
Sbjct: 288 ANAITQNHPEVYLIVLLIDERPEEVTDMERTVDAEVISSTFDEQATRHVQIAEIVLERAK 347
Query: 181 RLVEHKKDVIILLDSITRLARAYN 252
RLVEH+KDV+ILLDSITRLARAYN
Sbjct: 348 RLVEHRKDVVILLDSITRLARAYN 371
Score = 84.2 bits (199), Expect = 3e-15
Identities = 38/44 (86%), Positives = 43/44 (97%)
Frame = +3
Query: 258 VPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
+P SGKVL+GGVD+NALH+PKRFFGAARNVEEGGSLTIIATAL+
Sbjct: 374 MPTSGKVLSGGVDSNALHKPKRFFGAARNVEEGGSLTIIATALI 417
>UniRef50_A7M2K2 Cluster: Putative uncharacterized protein; n=1;
Bacteroides ovatus ATCC 8483|Rep: Putative
uncharacterized protein - Bacteroides ovatus ATCC 8483
Length = 765
Score = 124 bits (298), Expect = 3e-27
Identities = 59/86 (68%), Positives = 72/86 (83%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 180
A +IA NHP+ +++LLIDERPEEVT+M R V EV+ASTFDEPA RHV++A +V+EKAK
Sbjct: 539 ANAIAANHPEVYMIMLLIDERPEEVTDMARSVNAEVIASTFDEPAERHVKIAGIVLEKAK 598
Query: 181 RLVEHKKDVIILLDSITRLARAYNTL 258
RLVE DV+I LDSITRLARAYNT+
Sbjct: 599 RLVECGHDVVIFLDSITRLARAYNTV 624
Score = 85.0 bits (201), Expect = 2e-15
Identities = 39/45 (86%), Positives = 43/45 (95%)
Frame = +3
Query: 255 VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
V PASGKVL+GGVDANALH+PKRFFGAARN+E GGSLTIIATAL+
Sbjct: 624 VSPASGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIIATALI 668
>UniRef50_O67031 Cluster: Transcription termination factor rho;
n=251; Bacteria|Rep: Transcription termination factor
rho - Aquifex aeolicus
Length = 436
Score = 124 bits (298), Expect = 3e-27
Identities = 60/88 (68%), Positives = 74/88 (84%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK--GEVVASTFDEPASRHVQVAEMVIEK 174
AQ+I NHP+ L++LLIDERPEEVTEM+R+VK EVVASTFDEP RH+QVAE+V+EK
Sbjct: 208 AQAIIRNHPEVYLIILLIDERPEEVTEMRRIVKDKAEVVASTFDEPPERHMQVAEIVVEK 267
Query: 175 AKRLVEHKKDVIILLDSITRLARAYNTL 258
AKR+VE KKDV+IL+DS+TR RA N +
Sbjct: 268 AKRMVELKKDVVILMDSLTRFTRASNAV 295
Score = 73.3 bits (172), Expect = 5e-12
Identities = 32/45 (71%), Positives = 39/45 (86%)
Frame = +3
Query: 255 VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
V P +G+VLTGG++ A RPK+FFGAARN+EEGGSLTIIATAL+
Sbjct: 295 VTPPTGRVLTGGIEITAFQRPKKFFGAARNIEEGGSLTIIATALV 339
>UniRef50_Q8NR58 Cluster: Transcription termination factor; n=3;
Corynebacterium|Rep: Transcription termination factor -
Corynebacterium glutamicum (Brevibacterium flavum)
Length = 762
Score = 123 bits (297), Expect = 4e-27
Identities = 56/84 (66%), Positives = 70/84 (83%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 180
A +I+ N+P+C LMV+L+DERPEEVT+MQR V GEV++STFD P S H VAE+ IE+AK
Sbjct: 522 ANAISTNNPECYLMVVLVDERPEEVTDMQRSVNGEVISSTFDRPPSEHTAVAELAIERAK 581
Query: 181 RLVEHKKDVIILLDSITRLARAYN 252
RLVE +DV++LLDSITRL RAYN
Sbjct: 582 RLVEQGQDVVVLLDSITRLGRAYN 605
Score = 73.7 bits (173), Expect = 4e-12
Identities = 32/43 (74%), Positives = 40/43 (93%)
Frame = +3
Query: 261 PASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
PASG++L+GGVD+NAL+ PKRF GAARN+E GGSLTIIATA++
Sbjct: 609 PASGRILSGGVDSNALYPPKRFLGAARNIENGGSLTIIATAMV 651
>UniRef50_P52157 Cluster: Transcription termination factor rho;
n=14; Bacteria|Rep: Transcription termination factor rho
- Streptomyces lividans
Length = 707
Score = 123 bits (297), Expect = 4e-27
Identities = 57/84 (67%), Positives = 70/84 (83%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 180
A +I +N+P+C LMV+L+DERPEEVT+MQR VKGEV++STFD PA H VAE+ IE+AK
Sbjct: 472 ANAITHNNPECHLMVVLVDERPEEVTDMQRSVKGEVISSTFDRPAEDHTTVAELAIERAK 531
Query: 181 RLVEHKKDVIILLDSITRLARAYN 252
RLVE DV++LLDSITRL RAYN
Sbjct: 532 RLVELGHDVVVLLDSITRLGRAYN 555
Score = 74.5 bits (175), Expect = 2e-12
Identities = 32/43 (74%), Positives = 41/43 (95%)
Frame = +3
Query: 261 PASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
PASG++L+GGVD+ AL+ PKRFFGAARN+E+GGSLTI+ATAL+
Sbjct: 559 PASGRILSGGVDSTALYPPKRFFGAARNIEDGGSLTILATALV 601
>UniRef50_P45835 Cluster: Transcription termination factor rho;
n=87; Bacteria|Rep: Transcription termination factor rho
- Mycobacterium leprae
Length = 610
Score = 122 bits (295), Expect = 6e-27
Identities = 58/84 (69%), Positives = 69/84 (82%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 180
A +I N+ +C LMV+L+DERPEEVT+MQR VKGEV+ASTFD P S H VAE+ IE+AK
Sbjct: 375 ANAITRNNLECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTSVAELAIERAK 434
Query: 181 RLVEHKKDVIILLDSITRLARAYN 252
RLVE KDV++LLDSITRL RAYN
Sbjct: 435 RLVEQGKDVVVLLDSITRLGRAYN 458
Score = 74.1 bits (174), Expect = 3e-12
Identities = 33/51 (64%), Positives = 42/51 (82%)
Frame = +3
Query: 237 GARLQHVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
G + PASG++L+GGVD+ AL+ PKRF GAARN+EEGGSLTIIATA++
Sbjct: 454 GRAYNNASPASGRILSGGVDSTALYPPKRFLGAARNIEEGGSLTIIATAMV 504
>UniRef50_A7H9J7 Cluster: H+transporting two-sector ATPase
alpha/beta subunit central region; n=4;
Cystobacterineae|Rep: H+transporting two-sector ATPase
alpha/beta subunit central region - Anaeromyxobacter sp.
Fw109-5
Length = 364
Score = 118 bits (285), Expect = 1e-25
Identities = 57/84 (67%), Positives = 68/84 (80%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 180
AQ+I N PD L VLL+DERPEEVT+M+R +KGEVV S+ D P H+ VAEMV+E+AK
Sbjct: 140 AQAITANRPDVHLTVLLVDERPEEVTDMKRNIKGEVVGSSNDRPTEEHIHVAEMVLERAK 199
Query: 181 RLVEHKKDVIILLDSITRLARAYN 252
RLVE KDV+ILLDSITRL+RAYN
Sbjct: 200 RLVEGGKDVVILLDSITRLSRAYN 223
Score = 69.3 bits (162), Expect = 8e-11
Identities = 32/44 (72%), Positives = 37/44 (84%)
Frame = +3
Query: 258 VPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
V +SG+ LTGGVD+ AL RPKR FG+AR EEGGSLTIIATAL+
Sbjct: 226 VESSGRTLTGGVDSRALERPKRLFGSARKAEEGGSLTIIATALI 269
>UniRef50_Q2S0E2 Cluster: Transcription termination factor Rho; n=1;
Salinibacter ruber DSM 13855|Rep: Transcription
termination factor Rho - Salinibacter ruber (strain DSM
13855)
Length = 472
Score = 116 bits (280), Expect = 4e-25
Identities = 57/86 (66%), Positives = 68/86 (79%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 180
A IA NHPD L+ LLIDERPEEVT+M R V+GEVVASTFDE RHV+VA+ V+ K +
Sbjct: 247 AHGIATNHPDTHLLTLLIDERPEEVTDMDRTVEGEVVASTFDEEPERHVEVADTVLLKVR 306
Query: 181 RLVEHKKDVIILLDSITRLARAYNTL 258
RLVE +DV +LLDSITRLARA+N +
Sbjct: 307 RLVESGQDVCVLLDSITRLARAHNAV 332
Score = 68.5 bits (160), Expect = 1e-10
Identities = 31/45 (68%), Positives = 36/45 (80%)
Frame = +3
Query: 255 VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
V P G+ L+GG++A AL PKRFFGAARNVEE GSLTII TAL+
Sbjct: 332 VTPEKGRTLSGGIEAGALRGPKRFFGAARNVEESGSLTIIGTALI 376
>UniRef50_Q1FJZ5 Cluster: Transcription termination factor Rho; n=3;
Clostridiales|Rep: Transcription termination factor Rho
- Clostridium phytofermentans ISDg
Length = 650
Score = 116 bits (279), Expect = 5e-25
Identities = 57/87 (65%), Positives = 72/87 (82%), Gaps = 3/87 (3%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG---EVVASTFDEPASRHVQVAEMVIE 171
A++I NHP+ L++LLIDERPEEVT+++ ++G EV+ STFDE H +V+EMVIE
Sbjct: 418 AKAITRNHPEMHLIILLIDERPEEVTDIKESIEGGNVEVIYSTFDELPENHKRVSEMVIE 477
Query: 172 KAKRLVEHKKDVIILLDSITRLARAYN 252
+AKRLVEHKKDV+ILLDSITRLARAYN
Sbjct: 478 RAKRLVEHKKDVVILLDSITRLARAYN 504
Score = 68.9 bits (161), Expect = 1e-10
Identities = 31/44 (70%), Positives = 38/44 (86%)
Frame = +3
Query: 258 VPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
V ASG+ L+GG+D ALH PK+FFGAARN+ EGGSLTI+ATAL+
Sbjct: 507 VQASGRTLSGGLDPAALHMPKKFFGAARNMREGGSLTILATALV 550
>UniRef50_Q1AVG2 Cluster: Transcription termination factor Rho; n=1;
Rubrobacter xylanophilus DSM 9941|Rep: Transcription
termination factor Rho - Rubrobacter xylanophilus
(strain DSM 9941 / NBRC 16129)
Length = 498
Score = 116 bits (279), Expect = 5e-25
Identities = 57/85 (67%), Positives = 70/85 (82%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVK-GEVVASTFDEPASRHVQVAEMVIEKA 177
AQSIA N+P+ L VLL DERPEEVT+ +R V+ EVVASTFD+PA H+ VAE+V+E+
Sbjct: 268 AQSIAANYPEVRLFVLLADERPEEVTDWERSVREAEVVASTFDQPAENHIAVAELVLERV 327
Query: 178 KRLVEHKKDVIILLDSITRLARAYN 252
KRLVE +DV++LLDSITRLARAYN
Sbjct: 328 KRLVEEGEDVVVLLDSITRLARAYN 352
Score = 70.5 bits (165), Expect = 4e-11
Identities = 30/43 (69%), Positives = 40/43 (93%)
Frame = +3
Query: 261 PASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
PASG++L+GGVD+ AL+ PK+FFGAARN+E GGSLTI+A+AL+
Sbjct: 356 PASGRILSGGVDSAALYPPKKFFGAARNIENGGSLTILASALI 398
>UniRef50_Q9FC33 Cluster: Putative transcription terminator factor;
n=2; Streptomyces|Rep: Putative transcription terminator
factor - Streptomyces coelicolor
Length = 415
Score = 114 bits (275), Expect = 2e-24
Identities = 53/84 (63%), Positives = 71/84 (84%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 180
A ++A NHP+ LMV+L+DERPEEVT+M+R V+GEV +STFD A +H+ +AE+VIE+AK
Sbjct: 184 AAAVAGNHPEARLMVVLLDERPEEVTDMRRSVRGEVYSSTFDRSARQHIALAELVIERAK 243
Query: 181 RLVEHKKDVIILLDSITRLARAYN 252
RLVE +DV+ILLDS+TRL RA+N
Sbjct: 244 RLVEAGEDVVILLDSLTRLCRAHN 267
Score = 64.5 bits (150), Expect = 2e-09
Identities = 30/42 (71%), Positives = 35/42 (83%)
Frame = +3
Query: 264 ASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
+ G+ L+GGVDA AL PKRFFGAAR EEGGSLTI+ATAL+
Sbjct: 272 SGGRTLSGGVDAGALLGPKRFFGAARKAEEGGSLTILATALV 313
>UniRef50_Q8XIB4 Cluster: Transcription terminator Rho factor; n=4;
Clostridium|Rep: Transcription terminator Rho factor -
Clostridium perfringens
Length = 479
Score = 111 bits (267), Expect = 2e-23
Identities = 50/84 (59%), Positives = 70/84 (83%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 180
AQ+I+ N+P+ L+VLLIDERPEEVT+M+R + GEV+ STFDE H +V+ +V+E+AK
Sbjct: 247 AQNISKNNPEVKLIVLLIDERPEEVTDMKRSIDGEVIYSTFDEEPQNHAKVSSIVLERAK 306
Query: 181 RLVEHKKDVIILLDSITRLARAYN 252
R+VE +DV+IL+DS+TRL+RAYN
Sbjct: 307 RMVEQGRDVVILMDSLTRLSRAYN 330
Score = 64.1 bits (149), Expect = 3e-09
Identities = 29/44 (65%), Positives = 37/44 (84%)
Frame = +3
Query: 258 VPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
V SG+ L+GG+D AL PK+FFGAARN+EEGGSLTI+AT+L+
Sbjct: 333 VTPSGRTLSGGLDPGALIMPKKFFGAARNLEEGGSLTILATSLV 376
>UniRef50_A6CBM4 Cluster: Transcription termination factor Rho; n=1;
Planctomyces maris DSM 8797|Rep: Transcription
termination factor Rho - Planctomyces maris DSM 8797
Length = 543
Score = 107 bits (256), Expect = 3e-22
Identities = 48/84 (57%), Positives = 65/84 (77%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 180
A++++ NHP+ LMVLLIDERPEEVTEMQR +KGEV++S+ D HV+ ++++ E+ K
Sbjct: 315 AEAVSTNHPEIRLMVLLIDERPEEVTEMQRSIKGEVISSSMDRDVESHVRTSQLIFERGK 374
Query: 181 RLVEHKKDVIILLDSITRLARAYN 252
RL E +D ILLDSITR ARA+N
Sbjct: 375 RLAEAGEDAFILLDSITRTARAFN 398
Score = 52.0 bits (119), Expect = 1e-05
Identities = 20/41 (48%), Positives = 31/41 (75%)
Frame = +3
Query: 267 SGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
+G+ ++GG+D A+ PK+ FG AR +EGGSLT++ TAL+
Sbjct: 404 TGRTMSGGLDVKAMDIPKKMFGTARRFDEGGSLTVLGTALI 444
>UniRef50_A7CZI2 Cluster: H+transporting two-sector ATPase
alpha/beta subunit central region; n=1; Opitutaceae
bacterium TAV2|Rep: H+transporting two-sector ATPase
alpha/beta subunit central region - Opitutaceae
bacterium TAV2
Length = 403
Score = 105 bits (251), Expect = 1e-21
Identities = 47/85 (55%), Positives = 66/85 (77%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 180
A + NHP+C +M+LL+DERPEEVT+ +R V EV AS+ DE H+++A++ IE+A+
Sbjct: 178 ALGVLENHPECHVMILLVDERPEEVTDFKRSVPAEVWASSNDENVESHIRIADLCIERAR 237
Query: 181 RLVEHKKDVIILLDSITRLARAYNT 255
RLVE KDV++ LDS+TRLARA+NT
Sbjct: 238 RLVEAGKDVVLFLDSLTRLARAHNT 262
Score = 53.2 bits (122), Expect = 6e-06
Identities = 23/50 (46%), Positives = 35/50 (70%)
Frame = +3
Query: 240 ARLQHVVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
AR + SG+ +GG+D AL +P++ F +ARN E+GGSLTI+A+ L+
Sbjct: 257 ARAHNTQRNSGRTGSGGLDVRALEKPRQLFASARNTEDGGSLTIVASILI 306
>UniRef50_A3ZQF8 Cluster: Transcription termination factor Rho; n=2;
Planctomycetaceae|Rep: Transcription termination factor
Rho - Blastopirellula marina DSM 3645
Length = 444
Score = 103 bits (246), Expect = 5e-21
Identities = 49/84 (58%), Positives = 65/84 (77%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 180
++ IA N+P L+VLLIDERPEEVT+MQR + GEV+AS+ D HV+++++VIE+ K
Sbjct: 213 SKGIAANYPGVKLIVLLIDERPEEVTDMQRNINGEVIASSLDRDVESHVRLSQLVIERCK 272
Query: 181 RLVEHKKDVIILLDSITRLARAYN 252
RL E DV +LLDSITRLARA+N
Sbjct: 273 RLSEMGHDVFLLLDSITRLARAFN 296
Score = 50.0 bits (114), Expect = 5e-05
Identities = 23/41 (56%), Positives = 29/41 (70%)
Frame = +3
Query: 267 SGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
SG ++GGV+ AL PK+ F AR EEGGSLTI+ TAL+
Sbjct: 302 SGGTMSGGVNIKALDIPKKLFATARAFEEGGSLTIVGTALI 342
>UniRef50_Q5SJE9 Cluster: Transcription termination factor Rho; n=3;
Bacteria|Rep: Transcription termination factor Rho -
Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 426
Score = 102 bits (245), Expect = 7e-21
Identities = 52/85 (61%), Positives = 65/85 (76%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKG-EVVASTFDEPASRHVQVAEMVIEKA 177
A ++ N PD ++VLLIDERPEEVT+ + V+G EV+ASTFDEP H++VAE V E+A
Sbjct: 198 ANAVLKNEPDIKVIVLLIDERPEEVTDFRESVQGAEVIASTFDEPPQNHIRVAEFVHERA 257
Query: 178 KRLVEHKKDVIILLDSITRLARAYN 252
KR+VE V+ILLDSITRLARA N
Sbjct: 258 KRIVEEGGHVMILLDSITRLARANN 282
Score = 63.3 bits (147), Expect = 5e-09
Identities = 28/45 (62%), Positives = 37/45 (82%)
Frame = +3
Query: 255 VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
V P +G+ L+GG+D+ AL+ PKRF GAARN+ GGSLTI+ATAL+
Sbjct: 284 VTPPTGRTLSGGLDSAALYFPKRFLGAARNIRGGGSLTILATALV 328
>UniRef50_P76102 Cluster: Uncharacterized protein ydcM; n=42;
Proteobacteria|Rep: Uncharacterized protein ydcM -
Escherichia coli (strain K12)
Length = 402
Score = 99 bits (238), Expect = 5e-20
Identities = 42/43 (97%), Positives = 42/43 (97%)
Frame = -2
Query: 509 GWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKR 381
GWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKE R
Sbjct: 303 GWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKENR 345
>UniRef50_O80301 Cluster: ORF348; n=9; root|Rep: ORF348 -
Bacteriophage If1
Length = 348
Score = 94.3 bits (224), Expect = 3e-18
Identities = 40/43 (93%), Positives = 40/43 (93%)
Frame = -2
Query: 509 GWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKR 381
GWYEMRRQL YKQLWRGGQVLAVPPAYTSQRCA CGHTAKE R
Sbjct: 248 GWYEMRRQLEYKQLWRGGQVLAVPPAYTSQRCACCGHTAKENR 290
>UniRef50_Q2S040 Cluster: Transcription termination factor rho; n=1;
Salinibacter ruber DSM 13855|Rep: Transcription
termination factor rho - Salinibacter ruber (strain DSM
13855)
Length = 373
Score = 91.9 bits (218), Expect = 1e-17
Identities = 42/84 (50%), Positives = 59/84 (70%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 180
A + NHP+ L+ LL+DERPEEVT+ +R + +V AS+ D HV+V+ + +E AK
Sbjct: 146 AAGVTENHPEVELVSLLVDERPEEVTDFRRTTEAQVFASSNDRGEDNHVRVSTLAMEHAK 205
Query: 181 RLVEHKKDVIILLDSITRLARAYN 252
RLVE KDV++LLDS+TRL R +N
Sbjct: 206 RLVETGKDVVVLLDSLTRLGRTFN 229
Score = 61.3 bits (142), Expect = 2e-08
Identities = 28/44 (63%), Positives = 36/44 (81%)
Frame = +3
Query: 258 VPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
V SG+ L+GG+DA AL P++ FG+ARN+E GGSLTIIATAL+
Sbjct: 232 VDGSGRTLSGGLDAEALKVPRQIFGSARNIEGGGSLTIIATALV 275
>UniRef50_A5TX87 Cluster: Transcription termination factor Rho; n=3;
Fusobacterium nucleatum|Rep: Transcription termination
factor Rho - Fusobacterium nucleatum subsp. polymorphum
ATCC 10953
Length = 413
Score = 89.8 bits (213), Expect = 5e-17
Identities = 45/85 (52%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVV-ASTFDEPASRHVQVAEMVIEKA 177
A ++ D + +LLIDERPEEVT+++ V+G V ASTFD+ H++V E +IEKA
Sbjct: 181 ANALIEGQKDSEVWILLIDERPEEVTDIKENVEGATVFASTFDDDPKNHIKVTEEIIEKA 240
Query: 178 KRLVEHKKDVIILLDSITRLARAYN 252
K VE ++V+ILLDS+TRLARAYN
Sbjct: 241 KMKVEDGENVVILLDSLTRLARAYN 265
Score = 69.7 bits (163), Expect = 6e-11
Identities = 30/45 (66%), Positives = 39/45 (86%)
Frame = +3
Query: 255 VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
V+P+SGK+L+GG+D AL+ PK FFGAARN++ GGSLTIIAT L+
Sbjct: 267 VMPSSGKLLSGGIDPTALYHPKNFFGAARNIKNGGSLTIIATILV 311
>UniRef50_A1FWK2 Cluster: Putative uncharacterized protein
precursor; n=3; Proteobacteria|Rep: Putative
uncharacterized protein precursor - Stenotrophomonas
maltophilia R551-3
Length = 769
Score = 86.6 bits (205), Expect = 5e-16
Identities = 43/78 (55%), Positives = 56/78 (71%)
Frame = -1
Query: 252 VVSARQTSDGVEQNDNVFLVLNQAFGLLDHHFRNLNVARCGFVKGRSNNFTFYQTLHLGY 73
VV A Q D VEQ+ +V LVL+QA G LD HF +L+VAR V+GR+++FT + LHLG+
Sbjct: 225 VVGAGQAGDRVEQDHHVLLVLDQALGALDDHFGHLHVARGRLVEGRADDFTAHGALHLGH 284
Query: 72 FFRTFVDQQNHQHTIRVV 19
FFR VDQQ+ Q +RVV
Sbjct: 285 FFRALVDQQHDQVHVRVV 302
Score = 62.9 bits (146), Expect = 7e-09
Identities = 26/38 (68%), Positives = 33/38 (86%)
Frame = -2
Query: 389 EKRRRDNGQAAALFHVTRRTKEAFRTMQGVGIHTTGQH 276
++R D+GQAAA FH+TR T+EA RT+QGVG+HTTGQH
Sbjct: 179 DQRGGDDGQAAAFFHITRGTEEALRTVQGVGVHTTGQH 216
>UniRef50_A6VWI3 Cluster: H+transporting two-sector ATPase
alpha/beta subunit central region; n=4;
Gammaproteobacteria|Rep: H+transporting two-sector
ATPase alpha/beta subunit central region - Marinomonas
sp. MWYL1
Length = 318
Score = 82.2 bits (194), Expect = 1e-14
Identities = 39/83 (46%), Positives = 60/83 (72%)
Frame = +1
Query: 4 QSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKR 183
Q++A +P+ L LLIDERPEEVT+ +R V EV AS+ DE ++HV+VA+ ++ A++
Sbjct: 92 QAVAEAYPEIKLYALLIDERPEEVTDFKRSVSAEVHASSSDESYTQHVRVADALLATARK 151
Query: 184 LVEHKKDVIILLDSITRLARAYN 252
+DV+I++DS+TRLAR +N
Sbjct: 152 QAGEGQDVMIVIDSLTRLARVHN 174
Score = 55.2 bits (127), Expect = 1e-06
Identities = 23/41 (56%), Positives = 32/41 (78%)
Frame = +3
Query: 267 SGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALL 389
SG+ ++GG+D AL P++ FGAAR +E GGSLTI+AT L+
Sbjct: 180 SGRTMSGGLDTRALEIPRKLFGAARKIENGGSLTILATILV 220
>UniRef50_A0IKN4 Cluster: Transposase, IS605 OrfB; n=1; Serratia
proteamaculans 568|Rep: Transposase, IS605 OrfB -
Serratia proteamaculans 568
Length = 103
Score = 81.0 bits (191), Expect = 3e-14
Identities = 33/44 (75%), Positives = 37/44 (84%)
Frame = -2
Query: 509 GWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRR 378
GWYE+RRQL YKQLW GGQVLA+ PAYTSQ+C C HTAKE R+
Sbjct: 4 GWYELRRQLEYKQLWPGGQVLAINPAYTSQQCGCCAHTAKENRQ 47
>UniRef50_A0TJ39 Cluster: Putative uncharacterized protein; n=4;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia ambifaria MC40-6
Length = 454
Score = 77.8 bits (183), Expect = 2e-13
Identities = 39/79 (49%), Positives = 53/79 (67%)
Frame = -1
Query: 252 VVSARQTSDGVEQNDNVFLVLNQAFGLLDHHFRNLNVARCGFVKGRSNNFTFYQTLHLGY 73
VVSA +T D VEQN +V L ++A GLLDHHF +L+V R FV+ ++F + LH G+
Sbjct: 183 VVSACETRDRVEQNHDVVLHFDEALGLLDHHFGDLHVPRGRFVERGRDHFAGDRALHFGH 242
Query: 72 FFRTFVDQQNHQHTIRVVV 16
FF VDQQ+ Q +RVV+
Sbjct: 243 FFGALVDQQHEQDDVRVVL 261
Score = 35.9 bits (79), Expect = 0.93
Identities = 17/38 (44%), Positives = 23/38 (60%)
Frame = -2
Query: 389 EKRRRDNGQAAALFHVTRRTKEAFRTMQGVGIHTTGQH 276
++R D+ Q AA V RR +EA RT+Q V + T QH
Sbjct: 137 DQRGADDRQRAAFLDVARRAEEALRTLQCVRVDTARQH 174
>UniRef50_Q83MV6 Cluster: Transcription termination factor Rho; n=2;
Tropheryma whipplei|Rep: Transcription termination
factor Rho - Tropheryma whipplei (strain Twist)
(Whipple's bacillus)
Length = 454
Score = 76.2 bits (179), Expect = 7e-13
Identities = 36/83 (43%), Positives = 55/83 (66%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAK 180
A + + + L+ LL+ RPEE T M R ++GEVV S+ + V VAE+V+E++K
Sbjct: 256 AAGLCEQNKELHLITLLVGIRPEEATHMSRTLRGEVVVSSMECSPEEQVGVAELVLERSK 315
Query: 181 RLVEHKKDVIILLDSITRLARAY 249
RLVE +DV++++DS+T L RAY
Sbjct: 316 RLVEQGRDVLLIVDSMTHLGRAY 338
>UniRef50_UPI00015B8A54 Cluster: UPI00015B8A54 related cluster; n=1;
unknown|Rep: UPI00015B8A54 UniRef100 entry - unknown
Length = 1058
Score = 73.7 bits (173), Expect = 4e-12
Identities = 34/79 (43%), Positives = 52/79 (65%)
Frame = -1
Query: 255 RVVSARQTSDGVEQNDNVFLVLNQAFGLLDHHFRNLNVARCGFVKGRSNNFTFYQTLHLG 76
RVV A + DGVE++ +V VL+QA GLLDHH +L+VA V+GR ++ ++ H+G
Sbjct: 757 RVVGAAEAGDGVEEDHDVAAVLDQALGLLDHHLGDLHVAGGRLVEGRGDDLALHRADHVG 816
Query: 75 YFFRTFVDQQNHQHTIRVV 19
+ FR VD+Q+ + R+V
Sbjct: 817 HLFRALVDEQHDEVAFRMV 835
Score = 44.4 bits (100), Expect = 0.003
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = -2
Query: 389 EKRRRDNGQAAALFHVTRRTKEAFRTMQGVGIHTTGQH 276
++R RD+G+ AAL V R +EA +QGVGI T GQH
Sbjct: 712 DQRGRDDGERAALLDVAGRAEEALGPLQGVGIDTAGQH 749
>UniRef50_A3TXU1 Cluster: Putative uncharacterized protein; n=4;
Rhodobacterales|Rep: Putative uncharacterized protein -
Oceanicola batsensis HTCC2597
Length = 481
Score = 73.3 bits (172), Expect = 5e-12
Identities = 34/84 (40%), Positives = 55/84 (65%)
Frame = -1
Query: 255 RVVSARQTSDGVEQNDNVFLVLNQAFGLLDHHFRNLNVARCGFVKGRSNNFTFYQTLHLG 76
RV ++ D VE+++++ LVL+Q GLLDHH R+ +V R FV+ R N+ ++ LH+G
Sbjct: 159 RVECPTKSCDRVEKDNDISLVLDQTLGLLDHHLRDRHVPRRRFVECRGNHLALHRPLHVG 218
Query: 75 YFFRTFVDQQNHQHTIRVVVSNAL 4
+F +FVDQQ+ Q R++ N +
Sbjct: 219 HFLGSFVDQQDDQVAFRMIGLNRM 242
Score = 36.7 bits (81), Expect = 0.53
Identities = 17/38 (44%), Positives = 25/38 (65%)
Frame = -2
Query: 389 EKRRRDNGQAAALFHVTRRTKEAFRTMQGVGIHTTGQH 276
++ RRD+ Q ALF + RR +E ++Q V I+TT QH
Sbjct: 114 DQSRRDDRQRPALFDIPRRAEEPLGSLQCVRINTTRQH 151
>UniRef50_A7CGE5 Cluster: Putative uncharacterized protein; n=1;
Ralstonia pickettii 12D|Rep: Putative uncharacterized
protein - Ralstonia pickettii 12D
Length = 466
Score = 70.5 bits (165), Expect = 4e-11
Identities = 34/78 (43%), Positives = 48/78 (61%)
Frame = -1
Query: 252 VVSARQTSDGVEQNDNVFLVLNQAFGLLDHHFRNLNVARCGFVKGRSNNFTFYQTLHLGY 73
VV A QT D V+ + +V L +QA GL D HF +L+V G ++ R ++ + LH G+
Sbjct: 158 VVGAGQTRDRVQHDHHVLLQFDQALGLFDDHFGHLHVTHGGLIERRCHHLAAHGALHFGH 217
Query: 72 FFRTFVDQQNHQHTIRVV 19
FFRT VDQQ+ Q R+V
Sbjct: 218 FFRTLVDQQHEQLGFRMV 235
Score = 45.6 bits (103), Expect = 0.001
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = -2
Query: 389 EKRRRDNGQAAALFHVTRRTKEAFRTMQGVGIHTTGQH 276
++RR D+G+ A F VT RT+E R +Q +G+ T GQH
Sbjct: 112 DQRRTDDGERTAFFQVTCRTEETLRALQRIGVDTAGQH 149
>UniRef50_A3ZQQ3 Cluster: Putative uncharacterized protein; n=1;
Blastopirellula marina DSM 3645|Rep: Putative
uncharacterized protein - Blastopirellula marina DSM
3645
Length = 476
Score = 66.9 bits (156), Expect = 4e-10
Identities = 36/82 (43%), Positives = 51/82 (62%), Gaps = 3/82 (3%)
Frame = -1
Query: 255 RVVSARQTSDGVEQNDNVFLVLNQAFGLLDHHFRNLNVARCGFVKGRSNNF---TFYQTL 85
RV A QT D VE++ +V VL+ L DHH R+L+VAR FV+G +++ F TL
Sbjct: 159 RVPGASQTRDRVEEDHHVGTVLDHPLRLFDHHLRHLHVARRRFVEGGADDLAIRAFDLTL 218
Query: 84 HLGYFFRTFVDQQNHQHTIRVV 19
H+ +FFR FVDQQ+ + +V
Sbjct: 219 HVSHFFRAFVDQQDDDVGVGIV 240
Score = 40.7 bits (91), Expect = 0.033
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = -2
Query: 389 EKRRRDNGQAAALFHVTRRTKEAFRTMQGVGIHTTGQ 279
++RRRDN Q A F + RT+E F T+Q VG+ + G+
Sbjct: 114 DQRRRDNRQRAPFFDLASRTEEPFGTLQRVGVESAGE 150
>UniRef50_P21865 Cluster: Sensor protein kdpD; n=41;
Proteobacteria|Rep: Sensor protein kdpD - Escherichia
coli (strain K12)
Length = 894
Score = 62.9 bits (146), Expect = 7e-09
Identities = 31/37 (83%), Positives = 32/37 (86%)
Frame = -3
Query: 679 INVVSFESLFYRPSGTLAVSDVQYLLTFAVMLTVGLV 569
INVVSF+ F P GTLAVSDVQYLLTFAVMLTVGLV
Sbjct: 454 INVVSFDLFFIAPRGTLAVSDVQYLLTFAVMLTVGLV 490
>UniRef50_A1VIC7 Cluster: Transposase, IS605 OrfB family; n=3;
Polaromonas|Rep: Transposase, IS605 OrfB family -
Polaromonas naphthalenivorans (strain CJ2)
Length = 241
Score = 60.1 bits (139), Expect = 5e-08
Identities = 25/45 (55%), Positives = 30/45 (66%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRR 378
+ W E RQL YK WRGGQ++ V PAY+SQ CA C H A E R+
Sbjct: 132 AAWGEFGRQLQYKLQWRGGQLVLVEPAYSSQTCAACDHVAAENRK 176
>UniRef50_Q2JIC4 Cluster: ISSoc9, transposase; n=44; Bacteria|Rep:
ISSoc9, transposase - Synechococcus sp. (strain
JA-2-3B'a(2-13)) (Cyanobacteria bacteriumYellowstone
B-Prime)
Length = 589
Score = 55.6 bits (128), Expect = 1e-06
Identities = 20/44 (45%), Positives = 28/44 (63%)
Frame = -2
Query: 509 GWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRR 378
GWYE R L YK W+GG+++ VPP S+ C CGH + + R+
Sbjct: 304 GWYEFRCMLEYKLAWKGGRLIVVPPQNPSRTCPCCGHVSSDNRQ 347
>UniRef50_Q3IEZ6 Cluster: Putative transposase; n=1;
Pseudoalteromonas haloplanktis TAC125|Rep: Putative
transposase - Pseudoalteromonas haloplanktis (strain TAC
125)
Length = 388
Score = 54.4 bits (125), Expect = 2e-06
Identities = 22/43 (51%), Positives = 27/43 (62%)
Frame = -2
Query: 509 GWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKR 381
GW + L YKQ W GGQV+ V P +TSQ C CGH +K+ R
Sbjct: 285 GWGMFKEMLKYKQDWLGGQVIFVDPKHTSQTCPACGHQSKDNR 327
>UniRef50_Q7W533 Cluster: Sensor protein; n=5; Burkholderiales|Rep:
Sensor protein - Bordetella parapertussis
Length = 931
Score = 48.8 bits (111), Expect = 1e-04
Identities = 22/37 (59%), Positives = 29/37 (78%)
Frame = -3
Query: 679 INVVSFESLFYRPSGTLAVSDVQYLLTFAVMLTVGLV 569
++V F+ F +P + AVSDVQYLLTFAV+LTVGL+
Sbjct: 492 VSVALFDFFFVQPLASFAVSDVQYLLTFAVLLTVGLL 528
>UniRef50_Q9PFX1 Cluster: Transposase OrfB; n=3; Xylella
fastidiosa|Rep: Transposase OrfB - Xylella fastidiosa
Length = 390
Score = 47.2 bits (107), Expect = 4e-04
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
Frame = -2
Query: 509 GWYEMRRQLAYKQLWRGGQVLAVPPAY-TSQRCAYCGHTAKE 387
G++E RRQL YK + RGGQV+ + +S+RC CGHT E
Sbjct: 290 GFFEFRRQLEYKAMMRGGQVVVANRFFASSKRCLTCGHTLNE 331
>UniRef50_Q141X8 Cluster: ATPase FliI/YscN; n=1; Burkholderia
xenovorans LB400|Rep: ATPase FliI/YscN - Burkholderia
xenovorans (strain LB400)
Length = 444
Score = 47.2 bits (107), Expect = 4e-04
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 6/80 (7%)
Frame = +1
Query: 37 LMVLLIDERPEEVTEM------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHK 198
++V LI ER EV E +R V+A+T D PA+ ++ AE+ + A L
Sbjct: 192 IVVALIGERGREVAEFIHDHLERRRASTIVIAATSDRPAAERIKAAELASQVAVGLRASG 251
Query: 199 KDVIILLDSITRLARAYNTL 258
++V++L DS+TR ARA L
Sbjct: 252 RNVLLLFDSLTRYARALREL 271
>UniRef50_Q1J2W3 Cluster: Putative transposase, IS891/IS1136/IS1341;
n=2; Deinococcus|Rep: Putative transposase,
IS891/IS1136/IS1341 - Deinococcus geothermalis (strain
DSM 11300)
Length = 361
Score = 46.0 bits (104), Expect = 9e-04
Identities = 20/43 (46%), Positives = 25/43 (58%)
Frame = -2
Query: 509 GWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKR 381
GW + L++K G V+AV P YTSQ C CGHT +E R
Sbjct: 268 GWGQFFSLLSFKAASAGRTVIAVDPRYTSQACHKCGHTCRENR 310
>UniRef50_Q8XU09 Cluster: Sensor protein; n=8; Burkholderiaceae|Rep:
Sensor protein - Ralstonia solanacearum (Pseudomonas
solanacearum)
Length = 937
Score = 45.6 bits (103), Expect = 0.001
Identities = 22/37 (59%), Positives = 27/37 (72%)
Frame = -3
Query: 679 INVVSFESLFYRPSGTLAVSDVQYLLTFAVMLTVGLV 569
++V F+ F P + AVSDVQYLLTFAVML VGL+
Sbjct: 485 LSVALFDFFFVPPRYSFAVSDVQYLLTFAVMLAVGLL 521
>UniRef50_Q3JBU5 Cluster: Transposase, IS605 OrfB; n=2;
Nitrosococcus oceani ATCC 19707|Rep: Transposase, IS605
OrfB - Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848)
Length = 410
Score = 45.6 bits (103), Expect = 0.001
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = -2
Query: 506 WYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRRR 375
+YE+ + + YK G +V+ V P YTSQ C+ CGHT K+ R +
Sbjct: 297 FYELEQFIRYKADTFGMEVIGVDPKYTSQGCSRCGHTEKDNRHQ 340
>UniRef50_Q5KVX1 Cluster: Transposase; n=5; Firmicutes|Rep:
Transposase - Geobacillus kaustophilus
Length = 372
Score = 45.2 bits (102), Expect = 0.002
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -2
Query: 506 WYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRRR 375
+Y+ R+ L YK G +V+ V P YTS C CGHT K R +
Sbjct: 290 FYQFRQLLEYKARLHGSKVMVVAPHYTSLTCPKCGHTEKANRNK 333
>UniRef50_Q5ULQ4 Cluster: Transposase; n=1; Lactobacillus phage
LP65|Rep: Transposase - Lactobacillus phage LP65
Length = 387
Score = 44.8 bits (101), Expect = 0.002
Identities = 19/45 (42%), Positives = 26/45 (57%)
Frame = -2
Query: 518 TGSGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEK 384
+ W E R L YK W G Q++ V P YTSQ C+ CG+ + +K
Sbjct: 305 SNQSWREFRTILEYKCKWYGKQLIVVKPNYTSQICSSCGYHSGKK 349
>UniRef50_Q7NXN0 Cluster: Sensor protein; n=2; Bacteria|Rep: Sensor
protein - Chromobacterium violaceum
Length = 895
Score = 44.4 bits (100), Expect = 0.003
Identities = 20/38 (52%), Positives = 26/38 (68%)
Frame = -3
Query: 682 FINVVSFESLFYRPSGTLAVSDVQYLLTFAVMLTVGLV 569
F++V +F+ F P + AVSD QYLLTF VML V L+
Sbjct: 459 FLSVAAFDFFFVPPQLSFAVSDTQYLLTFGVMLVVALI 496
>UniRef50_UPI000018F643 Cluster: putative transposase; n=1;
Rhodothermus phage RM378|Rep: putative transposase -
Bacteriophage RM 378
Length = 246
Score = 44.0 bits (99), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = -2
Query: 506 WYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRR 378
+Y++R ++AYK G + P YTSQRC CGHT + R+
Sbjct: 139 FYDLRIKIAYKCALAGVPFELIDPRYTSQRCPVCGHTERANRK 181
>UniRef50_A5CZ86 Cluster: Transposase and inactivated derivatives;
n=1; Pelotomaculum thermopropionicum SI|Rep: Transposase
and inactivated derivatives - Pelotomaculum
thermopropionicum SI
Length = 561
Score = 44.0 bits (99), Expect = 0.004
Identities = 20/41 (48%), Positives = 23/41 (56%)
Frame = -2
Query: 500 EMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRR 378
E++ L W GG+V VPP YTSQ C CG KE RR
Sbjct: 459 ELQDHLKRDLEWLGGRVAFVPPEYTSQTCPICGWVDKENRR 499
>UniRef50_A4TG11 Cluster: Transposase, IS605 OrfB family; n=4;
Actinomycetales|Rep: Transposase, IS605 OrfB family -
Mycobacterium gilvum PYR-GCK
Length = 416
Score = 43.6 bits (98), Expect = 0.005
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = -2
Query: 509 GWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKR 381
GW++ L+ + G V+ VP AYTSQRC+ CGH + R
Sbjct: 304 GWHQFALVLSSAARYTGTNVVKVPAAYTSQRCSACGHVDPKSR 346
>UniRef50_A4SZG6 Cluster: Sensor protein; n=1; Polynucleobacter sp.
QLW-P1DMWA-1|Rep: Sensor protein - Polynucleobacter sp.
QLW-P1DMWA-1
Length = 897
Score = 43.6 bits (98), Expect = 0.005
Identities = 19/37 (51%), Positives = 26/37 (70%)
Frame = -3
Query: 679 INVVSFESLFYRPSGTLAVSDVQYLLTFAVMLTVGLV 569
+NV+ F+ F P + +VSD QY+ TFAVML VGL+
Sbjct: 456 VNVLVFDFFFVPPRFSFSVSDAQYVFTFAVMLVVGLI 492
>UniRef50_O67531 Cluster: Flagellum-specific ATP synthase; n=2;
Aquifex aeolicus|Rep: Flagellum-specific ATP synthase -
Aquifex aeolicus
Length = 443
Score = 43.2 bits (97), Expect = 0.006
Identities = 31/78 (39%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +1
Query: 34 VLMVLLIDERPEEVTEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVE 192
V+++ LI ER EV E V GE VV ST D+ V+ A + A
Sbjct: 190 VVVLALIGERGREVKEFLEEVLGEEGLKKSVVVVSTADQSPILKVKGAISAVVHAHHFAS 249
Query: 193 HKKDVIILLDSITRLARA 246
KDV++L+DSITRLA A
Sbjct: 250 QGKDVLLLMDSITRLALA 267
>UniRef50_Q74AA7 Cluster: Sensor protein; n=7; cellular
organisms|Rep: Sensor protein - Geobacter sulfurreducens
Length = 885
Score = 42.7 bits (96), Expect = 0.008
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = -3
Query: 682 FINVVSFESLFYRPSGTLAVSDVQYLLTFAVMLTVGLV 569
F+ V++F+ F P T AV+D QYL+TF + TVG+V
Sbjct: 442 FLGVLAFDFFFIPPHLTFAVADTQYLITFVALFTVGVV 479
>UniRef50_A5WGC6 Cluster: Transposase, IS605 OrfB family; n=19;
Psychrobacter sp. PRwf-1|Rep: Transposase, IS605 OrfB
family - Psychrobacter sp. PRwf-1
Length = 382
Score = 42.7 bits (96), Expect = 0.008
Identities = 16/36 (44%), Positives = 26/36 (72%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYC 405
+GW+E++RQL YK + G Q+ V +YT+Q C++C
Sbjct: 294 AGWFELKRQLEYKCKYAGCQLEIVNESYTTQTCSHC 329
>UniRef50_Q2SEY6 Cluster: Flagellum-specific ATP synthase; n=1;
Hahella chejuensis KCTC 2396|Rep: Flagellum-specific ATP
synthase - Hahella chejuensis (strain KCTC 2396)
Length = 416
Score = 42.3 bits (95), Expect = 0.011
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Frame = +1
Query: 34 VLMVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 192
V ++ LI ER EV+E + L K VVA+T DEPA V A + A+ +
Sbjct: 164 VNVIALIGERGREVSEFIQDNLGSDGLKKSVVVAATADEPALVRVHAAFVATAIAEYFKD 223
Query: 193 HKKDVIILLDSITRLARA 246
K V++ +DSITRLA A
Sbjct: 224 KGKHVMLYMDSITRLATA 241
>UniRef50_Q2JPM6 Cluster: ISSoc8, transposase; n=14;
Cyanobacteria|Rep: ISSoc8, transposase - Synechococcus
sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria
bacteriumYellowstone B-Prime)
Length = 384
Score = 42.3 bits (95), Expect = 0.011
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Frame = -2
Query: 506 WYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEK-RRRDNGQAAALFH 345
+Y++R +AYK G V+ VPPAYTSQ C C H E+ + NG++ H
Sbjct: 283 FYQLRTLVAYKAAIAGVPVVLVPPAYTSQTCHKCLHIHPERGKSYRNGKSFKCGH 337
>UniRef50_A4J2W1 Cluster: Transposase, IS605 OrfB family; n=1;
Desulfotomaculum reducens MI-1|Rep: Transposase, IS605
OrfB family - Desulfotomaculum reducens MI-1
Length = 372
Score = 42.3 bits (95), Expect = 0.011
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = -2
Query: 506 WYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKR 381
++++R + YK + G +V+ V P YTSQ C CGHT K R
Sbjct: 302 FHQLRSFIEYKAIAEGLKVVQVSPKYTSQGCHICGHTEKGNR 343
>UniRef50_A1KA55 Cluster: Sensor protein; n=1; Azoarcus sp.
BH72|Rep: Sensor protein - Azoarcus sp. (strain BH72)
Length = 509
Score = 42.3 bits (95), Expect = 0.011
Identities = 20/37 (54%), Positives = 27/37 (72%)
Frame = -3
Query: 679 INVVSFESLFYRPSGTLAVSDVQYLLTFAVMLTVGLV 569
++V F+ LF P + AVSDV+YL+TFAVML V L+
Sbjct: 67 VSVALFDFLFVPPQLSFAVSDVKYLITFAVMLLVSLL 103
>UniRef50_A0YZ04 Cluster: Transposase; n=4; Cyanobacteria|Rep:
Transposase - Lyngbya sp. PCC 8106
Length = 397
Score = 42.3 bits (95), Expect = 0.011
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKE 387
+GWY+ R+ L Y G +AV PAYTSQ C+ CG K+
Sbjct: 323 AGWYQFRKWLEYFGNKFGRVTVAVNPAYTSQNCSSCGTIVKK 364
>UniRef50_Q7A2A0 Cluster: Transposase; n=22; root|Rep: Transposase -
Anabaena sp. (strain PCC 7120)
Length = 402
Score = 41.9 bits (94), Expect = 0.014
Identities = 22/77 (28%), Positives = 34/77 (44%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRRRDNGQAAALFHVTRR 333
+ W + R+ + Y G +AVPP +TSQ C+ CG K+ H+ R
Sbjct: 294 AAWTQFRQWVEYFGKVFGVVTVAVPPHHTSQNCSNCGEVVKKSLSTRTHACPHCGHIQDR 353
Query: 332 TKEAFRTMQGVGIHTTG 282
A R + +G+ T G
Sbjct: 354 DWNAARNILELGLRTVG 370
>UniRef50_Q0SV01 Cluster: ISCpe2, transposase orfB; n=24;
Clostridium perfringens|Rep: ISCpe2, transposase orfB -
Clostridium perfringens (strain SM101 / Type A)
Length = 384
Score = 41.9 bits (94), Expect = 0.014
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAY-TSQRCAYCGH 399
+ W E RR L YK W G +++ PP Y +SQ C+ CG+
Sbjct: 309 ASWSEFRRMLEYKAEWYGRKIVIAPPDYASSQLCSECGY 347
>UniRef50_Q3J9P3 Cluster: Transposase; n=1; Nitrosococcus oceani
ATCC 19707|Rep: Transposase - Nitrosococcus oceani
(strain ATCC 19707 / NCIMB 11848)
Length = 383
Score = 41.5 bits (93), Expect = 0.019
Identities = 22/43 (51%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -2
Query: 509 GWYEMRRQLAYKQLWRGGQVLAVPP-AYTSQRCAYCGHTAKEK 384
GWYE+RRQL YK W G Q+ VP T+ C CG T EK
Sbjct: 289 GWYELRRQLTYKAKWYGRQLNVVPRFQRTTGVCPDCG-TVGEK 330
>UniRef50_Q119K5 Cluster: Transposase, IS605 OrfB family; n=5;
Oscillatoriales|Rep: Transposase, IS605 OrfB family -
Trichodesmium erythraeum (strain IMS101)
Length = 362
Score = 41.5 bits (93), Expect = 0.019
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAY-TSQRCAYCGHTAKE 387
+ W E+ RQL YK W GG ++ + + +S+RC+ CGH ++
Sbjct: 233 ANWVELLRQLEYKAEWYGGTLIKIKRYFLSSKRCSNCGHVVEK 275
>UniRef50_A4XGL7 Cluster: Transposase, IS605 OrfB family; n=4;
Bacteria|Rep: Transposase, IS605 OrfB family -
Caldicellulosiruptor saccharolyticus (strain ATCC 43494
/ DSM 8903)
Length = 405
Score = 41.5 bits (93), Expect = 0.019
Identities = 18/46 (39%), Positives = 29/46 (63%)
Frame = -2
Query: 515 GSGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRR 378
G + + +R+L K ++ G + + V +YTSQRC+ CGH +K RR
Sbjct: 308 GIPYDKFKRKLKSKCMYYGIRYVEVDESYTSQRCSRCGHVSKSSRR 353
>UniRef50_Q9WXY8 Cluster: Transposase, putative; n=3;
Thermotoga|Rep: Transposase, putative - Thermotoga
maritima
Length = 410
Score = 41.1 bits (92), Expect = 0.025
Identities = 20/46 (43%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = -2
Query: 497 MRRQLAYK-QLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRRRDNGQ 363
+++++ YK +L+ G Q V P+YTSQ C CGH +KE R D+G+
Sbjct: 315 LQQKIEYKAKLYYGVQSEKVDPSYTSQTCPRCGHVSKE-NRPDHGE 359
>UniRef50_O05528 Cluster: Flagellum-specific ATP synthase; n=26;
Alphaproteobacteria|Rep: Flagellum-specific ATP synthase
- Caulobacter crescentus (Caulobacter vibrioides)
Length = 444
Score = 41.1 bits (92), Expect = 0.025
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Frame = +1
Query: 37 LMVLLIDERPEEVTEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVEH 195
++V LI ER EV E GE VV +T DEPA Q A M + ++ + +
Sbjct: 186 VVVGLIGERGREVREFVEETLGEEGLRRAVVVVATSDEPALTRRQAAYMTLAISEFMRDQ 245
Query: 196 KKDVIILLDSITRLARA 246
++V+ L+DS+TR A A
Sbjct: 246 DQEVLCLMDSVTRFAMA 262
>UniRef50_Q47A44 Cluster: Sensor protein; n=1; Dechloromonas
aromatica RCB|Rep: Sensor protein - Dechloromonas
aromatica (strain RCB)
Length = 512
Score = 40.7 bits (91), Expect = 0.033
Identities = 18/37 (48%), Positives = 27/37 (72%)
Frame = -3
Query: 679 INVVSFESLFYRPSGTLAVSDVQYLLTFAVMLTVGLV 569
++V+ F+ F P +LAVS++QYL+TFAVML L+
Sbjct: 73 LSVLLFDIFFVPPRFSLAVSNIQYLVTFAVMLVTALI 109
>UniRef50_A4TFZ8 Cluster: Transposase, IS605 OrfB family; n=1;
Mycobacterium gilvum PYR-GCK|Rep: Transposase, IS605
OrfB family - Mycobacterium gilvum PYR-GCK
Length = 419
Score = 40.7 bits (91), Expect = 0.033
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -2
Query: 518 TGSGWY--EMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKR 381
T S W ++ L+YK G ++ V PAYTSQRC CGH + R
Sbjct: 329 THSSWAFAQLGAFLSYKAARAGVPIVQVDPAYTSQRCTACGHIDRRNR 376
>UniRef50_P52607 Cluster: Flagellum-specific ATP synthase; n=3;
Borrelia burgdorferi group|Rep: Flagellum-specific ATP
synthase - Borrelia burgdorferi (Lyme disease
spirochete)
Length = 436
Score = 40.7 bits (91), Expect = 0.033
Identities = 36/89 (40%), Positives = 45/89 (50%), Gaps = 10/89 (11%)
Frame = +1
Query: 10 IAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDE-PASRH--VQVAE 159
IA N V ++ I ER E+ E +RL K +V ST DE P SR+ VA
Sbjct: 178 IAKNSNADVNVIAFIGERGRELNEFIEHELGEERLKKSVLVVSTSDESPISRYKGAYVAT 237
Query: 160 MVIEKAKRLVEHKKDVIILLDSITRLARA 246
M+ E + E KDV +L DSITR A A
Sbjct: 238 MIAEYFR---EQGKDVALLFDSITRFANA 263
>UniRef50_Q2CGJ3 Cluster: Flagellum-specific ATP synthase; n=1;
Oceanicola granulosus HTCC2516|Rep: Flagellum-specific
ATP synthase - Oceanicola granulosus HTCC2516
Length = 438
Score = 40.3 bits (90), Expect = 0.043
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Frame = +1
Query: 10 IAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVI 168
+A N V++V LI ER EV + + L + +V +T DEP Q A +
Sbjct: 166 LARNADVDVIVVGLIGERGREVQDFIQADLGPEGLARAVLVVATGDEPPLMRRQAAWTAM 225
Query: 169 EKAKRLVEHKKDVIILLDSITRLARA 246
A+ + K V++LLDSITR A A
Sbjct: 226 AVAEHFRDRGKQVLLLLDSITRFATA 251
>UniRef50_Q0EZL2 Cluster: Flagellum-specific ATP synthase; n=1;
Mariprofundus ferrooxydans PV-1|Rep: Flagellum-specific
ATP synthase - Mariprofundus ferrooxydans PV-1
Length = 471
Score = 40.3 bits (90), Expect = 0.043
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Frame = +1
Query: 10 IAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVI 168
+A N V ++ L+ ER EV E + L V+ +T D P V+ A M
Sbjct: 185 LARNSDAEVNVIALVGERSREVREFLDQALGSEALQHSVVIVATSDMPPVLRVRAAHMAT 244
Query: 169 EKAKRLVEHKKDVIILLDSITRLARA 246
A+ E K V++L+DS+TR+A+A
Sbjct: 245 TIAEAFREQGKRVLLLMDSLTRVAQA 270
>UniRef50_A3JHU7 Cluster: Putative uncharacterized protein; n=1;
Marinobacter sp. ELB17|Rep: Putative uncharacterized
protein - Marinobacter sp. ELB17
Length = 241
Score = 40.3 bits (90), Expect = 0.043
Identities = 18/40 (45%), Positives = 25/40 (62%)
Frame = -2
Query: 500 EMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKR 381
++R+ AYK RG ++ V P Y+SQ C+ CGHT K R
Sbjct: 104 QIRQFTAYKLKDRGKLMVRVKPHYSSQECSQCGHTEKGNR 143
>UniRef50_Q7UIJ0 Cluster: Flagellum-specific ATP synthase; n=3;
Planctomycetaceae|Rep: Flagellum-specific ATP synthase -
Rhodopirellula baltica
Length = 467
Score = 39.9 bits (89), Expect = 0.057
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Frame = +1
Query: 37 LMVLLIDERPEEVTE-MQR------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEH 195
+++ ++ ER EV E MQR L + VV +T D+PA++ + A A++ +
Sbjct: 199 IVIAMVGERGREVQEFMQRALGAAGLKRSVVVVATSDKPAAQRLSAAWTATAIAEKFRDE 258
Query: 196 KKDVIILLDSITRLARAYNTL 258
V++L+DS+TR A A L
Sbjct: 259 GHRVLLLVDSVTRFAMAQREL 279
>UniRef50_Q8VNS1 Cluster: EscN protein; n=11;
Enterobacteriaceae|Rep: EscN protein - Escherichia coli
Length = 446
Score = 39.9 bits (89), Expect = 0.057
Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 6/77 (7%)
Frame = +1
Query: 34 VLMVLLIDERPEEVTEMQRLV------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEH 195
++++ LI ER EV E L+ K +V +T D PA ++ A A+ +
Sbjct: 198 IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEFFRDQ 257
Query: 196 KKDVIILLDSITRLARA 246
K+V++++DS+TR ARA
Sbjct: 258 GKNVLLMMDSVTRYARA 274
>UniRef50_Q2JT81 Cluster: ISSoc7, transposase; n=17; root|Rep:
ISSoc7, transposase - Synechococcus sp. (strain
JA-3-3Ab) (Cyanobacteria bacteriumYellowstone A-Prime)
Length = 409
Score = 39.5 bits (88), Expect = 0.076
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 509 GWYEMRRQLAYKQLWRGGQVLAVPPAY-TSQRCAYCGHTAK 390
G+YE RRQL YK G QV+ Y +SQ C+ CGH K
Sbjct: 289 GFYEFRRQLEYKARLYGCQVVVADRFYPSSQLCSRCGHRQK 329
>UniRef50_Q2JIA2 Cluster: ISSoc1, transposase; n=49;
Chroococcales|Rep: ISSoc1, transposase - Synechococcus
sp. (strain JA-2-3B'a(2-13)) (Cyanobacteria
bacteriumYellowstone B-Prime)
Length = 429
Score = 39.5 bits (88), Expect = 0.076
Identities = 17/36 (47%), Positives = 23/36 (63%)
Frame = -2
Query: 506 WYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGH 399
+Y++R+ L YK G ++ VPPAYTSQ C C H
Sbjct: 309 FYQLRQFLEYKARVAGVSLILVPPAYTSQTCHKCLH 344
>UniRef50_A6Q2N1 Cluster: Flagellar-specific ATP synthase FliI; n=1;
Nitratiruptor sp. SB155-2|Rep: Flagellar-specific ATP
synthase FliI - Nitratiruptor sp. (strain SB155-2)
Length = 431
Score = 39.5 bits (88), Expect = 0.076
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Frame = +1
Query: 40 MVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHK 198
++ LI ER EV E + L K VV +T D+P ++ + + A +
Sbjct: 172 VIALIGERGREVREFIEDNLGKEGLEKSIVVVATSDQPPLAKLRAVHVAMAYASYFSKKG 231
Query: 199 KDVIILLDSITRLARA 246
KDV+ L+DS+TRLA A
Sbjct: 232 KDVLFLVDSLTRLAMA 247
>UniRef50_Q9HSZ6 Cluster: Putative uncharacterized protein; n=2;
Halobacterium salinarum|Rep: Putative uncharacterized
protein - Halobacterium salinarium (Halobacterium
halobium)
Length = 378
Score = 39.5 bits (88), Expect = 0.076
Identities = 21/40 (52%), Positives = 23/40 (57%)
Frame = -2
Query: 488 QLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRRRDN 369
Q+AYK G V V AYTS+RCA CG TA E R N
Sbjct: 261 QVAYKAEAIGVSVTQVGAAYTSKRCAECGFTADENRPTRN 300
>UniRef50_P55717 Cluster: Probable ATP synthase y4yI; n=27;
Bacteria|Rep: Probable ATP synthase y4yI - Rhizobium sp.
(strain NGR234)
Length = 451
Score = 39.5 bits (88), Expect = 0.076
Identities = 30/78 (38%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Frame = +1
Query: 34 VLMVLLIDERPEEVTEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVE 192
V++V LI ER EV E GE VV T D A+ Q A M A+ E
Sbjct: 202 VVIVALIGERGREVREFVERHLGEEGLRRAIVVVETSDRSATERAQCAPMATALAEYFRE 261
Query: 193 HKKDVIILLDSITRLARA 246
V +LLDS+TR RA
Sbjct: 262 QGLRVALLLDSLTRFCRA 279
>UniRef50_Q8DG92 Cluster: Tll2431 protein; n=21; Cyanobacteria|Rep:
Tll2431 protein - Synechococcus elongatus
(Thermosynechococcus elongatus)
Length = 408
Score = 38.7 bits (86), Expect = 0.13
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAY-TSQRCAYCGH 399
+GW E+ RQL YK W G ++ + + +S+RC CGH
Sbjct: 306 AGWGELVRQLEYKAQWYGRTLVKIDQWFPSSKRCGQCGH 344
>UniRef50_Q1IZV4 Cluster: Transposase, IS605 OrfB; n=4;
Bacteria|Rep: Transposase, IS605 OrfB - Deinococcus
geothermalis (strain DSM 11300)
Length = 450
Score = 38.7 bits (86), Expect = 0.13
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = -2
Query: 500 EMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKR 381
E+ LAYK G V+ V YTSQ C CGH ++E R
Sbjct: 321 ELLSFLAYKAPLHGSMVVKVDAHYTSQTCPRCGHCSRENR 360
>UniRef50_A7CYE2 Cluster: Flagellar protein export ATPase FliI; n=1;
Opitutaceae bacterium TAV2|Rep: Flagellar protein export
ATPase FliI - Opitutaceae bacterium TAV2
Length = 461
Score = 38.7 bits (86), Expect = 0.13
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Frame = +1
Query: 34 VLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 192
V+++ L+ ER EV E + L + VV +T D PA ++ A A+ +
Sbjct: 203 VVVIGLVGERGREVREFLEKDLGAEGLARSVVVVATSDSPAPLRLRAAFTATAIAESYRD 262
Query: 193 HKKDVIILLDSITRLARA 246
K+V++L+DS+TR A A
Sbjct: 263 QGKNVLLLMDSVTRFAMA 280
>UniRef50_A2W3Z6 Cluster: ATPase FliI/YscN; n=1; Burkholderia
cenocepacia PC184|Rep: ATPase FliI/YscN - Burkholderia
cenocepacia PC184
Length = 386
Score = 38.7 bits (86), Expect = 0.13
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +1
Query: 34 VLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 192
V ++ L+ ER EV E + + VV ST D PA V+ A + A+ +
Sbjct: 119 VNVIALVGERGREVREFIEHSLSPEVRARSIVVVSTSDRPAMERVKSALVATAIAEHFRD 178
Query: 193 HKKDVIILLDSITRLARA 246
K V++L+DS+TR ARA
Sbjct: 179 AGKRVLLLVDSLTRFARA 196
>UniRef50_A1EBU5 Cluster: SctN; n=1; Lysobacter enzymogenes|Rep:
SctN - Lysobacter enzymogenes
Length = 450
Score = 38.7 bits (86), Expect = 0.13
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +1
Query: 34 VLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 192
V ++ L+ ER EV E + L K +V +T D PA + A + A+ +
Sbjct: 201 VNVIALVGERGREVNEFIHDNLGEEGLKKSIIVVATSDRPALERSRAAWVATAIAEYFRD 260
Query: 193 HKKDVIILLDSITRLARA 246
K V++L+DS+TR ARA
Sbjct: 261 RGKRVMLLVDSVTRFARA 278
>UniRef50_Q898S9 Cluster: Transposase; n=11; root|Rep: Transposase -
Clostridium tetani
Length = 329
Score = 38.3 bits (85), Expect = 0.18
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAY-TSQRCAYCGH 399
+ W E RR L YK W G +++ P Y +SQ C+ CG+
Sbjct: 254 ASWSEFRRMLEYKASWYGRKIIIAPFNYASSQLCSECGY 292
>UniRef50_Q2JSB2 Cluster: ISSoc1, transposase, truncation; n=1;
Synechococcus sp. JA-3-3Ab|Rep: ISSoc1, transposase,
truncation - Synechococcus sp. (strain JA-3-3Ab)
(Cyanobacteria bacteriumYellowstone A-Prime)
Length = 141
Score = 38.3 bits (85), Expect = 0.18
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = -2
Query: 506 WYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYC 405
+Y++R+ + YK G QV+ VPPAY+SQ C C
Sbjct: 42 FYQLRQFVHYKAARAGIQVVVVPPAYSSQTCHQC 75
>UniRef50_A0VDN8 Cluster: Sensor protein; n=3; Proteobacteria|Rep:
Sensor protein - Delftia acidovorans SPH-1
Length = 986
Score = 38.3 bits (85), Expect = 0.18
Identities = 17/37 (45%), Positives = 24/37 (64%)
Frame = -3
Query: 679 INVVSFESLFYRPSGTLAVSDVQYLLTFAVMLTVGLV 569
++V+ F+ F P G+ V+D QYL TF +ML V LV
Sbjct: 553 LSVLCFDYFFVPPRGSFHVNDTQYLFTFVLMLGVALV 589
>UniRef50_Q8ZN02 Cluster: Gifsy-1 prophage protein; n=34; root|Rep:
Gifsy-1 prophage protein - Salmonella typhimurium
Length = 416
Score = 37.9 bits (84), Expect = 0.23
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAY-TSQRCAYCGHTAKE 387
+ W E+ RQL YK W G V+A+ + +S+RC+ CG K+
Sbjct: 325 ASWGELVRQLRYKGEWAGRSVVAIDQFFPSSKRCSCCGFIMKK 367
>UniRef50_Q8KKY7 Cluster: Type III secretion system ATP synthase
protein; n=2; Proteobacteria|Rep: Type III secretion
system ATP synthase protein - Rhizobium etli (strain CFN
42 / ATCC 51251)
Length = 439
Score = 37.9 bits (84), Expect = 0.23
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEVTEM--QRLVKG-----EVVASTFDEPASRHVQVAE 159
+Q +A N D V++ L+ ER EV E + +G +V +T D PA +
Sbjct: 180 SQIVANNKAD-VIVCALVGERGREVGEFVADNMPEGVASNVALVLATSDRPALERFKAVM 238
Query: 160 MVIEKAKRLVEHKKDVIILLDSITRLARA 246
A+ E K V++++DS+TR+ARA
Sbjct: 239 TATAIAEYFREQGKHVLLVIDSVTRMARA 267
>UniRef50_Q5FHZ3 Cluster: Transposase; n=1; Lactobacillus
acidophilus|Rep: Transposase - Lactobacillus acidophilus
Length = 297
Score = 37.9 bits (84), Expect = 0.23
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEK 384
+ W R+ + YK W +++AV P TS+ C+ CG+ + EK
Sbjct: 221 ASWSMFRQMMEYKCQWYDKKLIAVDPKNTSRICSKCGYNSGEK 263
>UniRef50_Q392X5 Cluster: Sensor protein; n=1; Burkholderia sp.
383|Rep: Sensor protein - Burkholderia sp. (strain 383)
(Burkholderia cepacia (strain ATCC 17760/ NCIB 9086 /
R18194))
Length = 568
Score = 37.9 bits (84), Expect = 0.23
Identities = 18/37 (48%), Positives = 23/37 (62%)
Frame = -3
Query: 682 FINVVSFESLFYRPSGTLAVSDVQYLLTFAVMLTVGL 572
F+ V F+ F P + AVSD QY+ TFA+ML V L
Sbjct: 130 FVCVGCFDFFFVEPRLSFAVSDTQYVFTFALMLAVAL 166
>UniRef50_Q6T8F4 Cluster: Putative IS1341 element transposase; n=1;
Chlamydia suis|Rep: Putative IS1341 element transposase
- Chlamydia suis
Length = 459
Score = 37.9 bits (84), Expect = 0.23
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -2
Query: 509 GWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRR 378
GW+ + YK V +P TSQ CA CGHT + R+
Sbjct: 336 GWHVIETYTYYKAYSSSKAVFKIPAPTTSQECAKCGHTHPDNRK 379
>UniRef50_A5VI23 Cluster: Transposase, IS605 OrfB family; n=6;
Lactobacillus|Rep: Transposase, IS605 OrfB family -
Lactobacillus reuteri F275
Length = 391
Score = 37.9 bits (84), Expect = 0.23
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCG 402
+ W ++ L YK W G +++ V P+YTSQ CA CG
Sbjct: 309 ASWSKLVDILQYKCNWYGKKLIQVNPSYTSQICANCG 345
>UniRef50_A3IV11 Cluster: ISSoc1, transposase; n=2; Cyanothece sp.
CCY 0110|Rep: ISSoc1, transposase - Cyanothece sp. CCY
0110
Length = 417
Score = 37.9 bits (84), Expect = 0.23
Identities = 16/36 (44%), Positives = 23/36 (63%)
Frame = -2
Query: 506 WYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGH 399
+Y++R L YK + G +V+A+ P YTSQ C C H
Sbjct: 322 FYQLRTFLEYKGIKEGIEVIAINPRYTSQTCHCCLH 357
>UniRef50_Q8PZB5 Cluster: Transposase; n=2; Euryarchaeota|Rep:
Transposase - Methanosarcina mazei (Methanosarcina
frisia)
Length = 357
Score = 37.9 bits (84), Expect = 0.23
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = -2
Query: 500 EMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRRR 375
++++ + YK RG +V+ + P TS++C+ CGHT + +R
Sbjct: 241 QLQQFIEYKARLRGVEVVYIDPYATSKKCSRCGHTGNRQSKR 282
>UniRef50_Q67K17 Cluster: Flagellar-specific ATP synthase; n=1;
Symbiobacterium thermophilum|Rep: Flagellar-specific ATP
synthase - Symbiobacterium thermophilum
Length = 436
Score = 37.5 bits (83), Expect = 0.31
Identities = 28/81 (34%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Frame = +1
Query: 28 DCVLMVLLIDERPEEVTEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRL 186
DC + + L+ ER EV E GE VV +T ++P+ ++ A M A+
Sbjct: 182 DCNV-IALVGERGREVREFIEKDLGEEGLRRSVVVVATSEQPSLVRIRAALMATAIAEYF 240
Query: 187 VE-HKKDVIILLDSITRLARA 246
+ H DVI+++DS+TRLA A
Sbjct: 241 RDAHGLDVILMMDSVTRLAHA 261
>UniRef50_Q2S638 Cluster: IS605 family transposase orfB; n=1;
Salinibacter ruber DSM 13855|Rep: IS605 family
transposase orfB - Salinibacter ruber (strain DSM 13855)
Length = 396
Score = 37.5 bits (83), Expect = 0.31
Identities = 18/41 (43%), Positives = 20/41 (48%)
Frame = -2
Query: 500 EMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRR 378
E R + YK G V V AYTSQ C +CGH K R
Sbjct: 291 EFARMIEYKAKLAGITVERVDEAYTSQECPHCGHRKKSSGR 331
>UniRef50_Q1WRF3 Cluster: Transposase ISLasa12, IS607 family; n=1;
Lactobacillus salivarius subsp. salivarius UCC118|Rep:
Transposase ISLasa12, IS607 family - Lactobacillus
salivarius subsp. salivarius (strain UCC118)
Length = 405
Score = 37.5 bits (83), Expect = 0.31
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -2
Query: 506 WYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRRRD 372
+Y++ + L YK +V+ V YTSQRC CG K+ R +
Sbjct: 316 FYQLEQFLTYKAHLNNSEVVEVSAKYTSQRCPKCGVIKKDNRNHE 360
>UniRef50_Q5V3V1 Cluster: Transposase; n=7; Halobacteriaceae|Rep:
Transposase - Haloarcula marismortui (Halobacterium
marismortui)
Length = 424
Score = 37.5 bits (83), Expect = 0.31
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 482 AYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRRR 375
+YK + G + P YTSQRC CGHT + R +
Sbjct: 312 SYKASFEGIPTAWINPEYTSQRCPMCGHTERANRNK 347
>UniRef50_A4YGW8 Cluster: Transposase, IS605 OrfB family; n=1;
Metallosphaera sedula DSM 5348|Rep: Transposase, IS605
OrfB family - Metallosphaera sedula DSM 5348
Length = 405
Score = 37.5 bits (83), Expect = 0.31
Identities = 19/49 (38%), Positives = 26/49 (53%)
Frame = -2
Query: 536 RLKPFDTGSGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAK 390
RL+ S + L+YK G +V+ V PAYTSQ C+ CG+ K
Sbjct: 281 RLRKHILYSSFSTFLHHLSYKAERAGRRVVEVDPAYTSQTCSRCGYRVK 329
>UniRef50_Q2JBK1 Cluster: Transposase, IS605 OrfB; n=1; Frankia sp.
CcI3|Rep: Transposase, IS605 OrfB - Frankia sp. (strain
CcI3)
Length = 267
Score = 37.1 bits (82), Expect = 0.40
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -2
Query: 536 RLKPFDTGSGWYEMRRQLAYKQLWRGGQVLAVPPAY-TSQRCAYCG 402
RL + +G E+RRQLAYK LW G ++ Y +S+ C+ CG
Sbjct: 99 RLARAVSDTGMAEVRRQLAYKTLWYGSTLVVADRWYPSSKTCSGCG 144
>UniRef50_Q2J7W8 Cluster: Transposase, IS605 OrfB; n=10;
Actinomycetales|Rep: Transposase, IS605 OrfB - Frankia
sp. (strain CcI3)
Length = 356
Score = 37.1 bits (82), Expect = 0.40
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -2
Query: 536 RLKPFDTGSGWYEMRRQLAYKQLWRGGQVLAVPPAY-TSQRCAYCG 402
RL + +G E+RRQLAYK LW G ++ Y +S+ C+ CG
Sbjct: 228 RLARAVSDTGMAEVRRQLAYKTLWYGSTLVVADRWYPSSKTCSDCG 273
>UniRef50_A7AXN0 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus gnavus ATCC 29149|Rep: Putative
uncharacterized protein - Ruminococcus gnavus ATCC 29149
Length = 369
Score = 37.1 bits (82), Expect = 0.40
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 509 GWYEMRRQLAYKQLWRGGQVLAVPP-AYTSQRCAYCGH 399
GWYE+ RQL YK W Q + + +SQ C CG+
Sbjct: 289 GWYELTRQLQYKSDWNNRQYIKIGRFTKSSQPCNVCGY 326
>UniRef50_A0GWD0 Cluster: Transposase, IS605 OrfB; n=1; Chloroflexus
aggregans DSM 9485|Rep: Transposase, IS605 OrfB -
Chloroflexus aggregans DSM 9485
Length = 481
Score = 37.1 bits (82), Expect = 0.40
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = -2
Query: 500 EMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRR 378
+++ + YK +G V V P TS+ C CGH AKE RR
Sbjct: 391 QLKAFIVYKAALKGIPVHFVDPRNTSRTCPACGHCAKENRR 431
>UniRef50_P74857 Cluster: Probable secretion system apparatus ATP
synthase ssaN; n=17; Gammaproteobacteria|Rep: Probable
secretion system apparatus ATP synthase ssaN -
Salmonella typhimurium
Length = 433
Score = 37.1 bits (82), Expect = 0.40
Identities = 30/84 (35%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Frame = +1
Query: 19 NHPDCVLMVL-LIDERPEEVTEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEK 174
N PD VL LI ER EV E E +V +T D PA V+ +
Sbjct: 177 NAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRALFVATTI 236
Query: 175 AKRLVEHKKDVIILLDSITRLARA 246
A+ ++ K V++L DS+TR ARA
Sbjct: 237 AEFFRDNGKRVVLLADSLTRYARA 260
>UniRef50_Q63VS0 Cluster: Sensor protein; n=35; Bacteria|Rep: Sensor
protein - Burkholderia pseudomallei (Pseudomonas
pseudomallei)
Length = 993
Score = 36.7 bits (81), Expect = 0.53
Identities = 17/38 (44%), Positives = 24/38 (63%)
Frame = -3
Query: 682 FINVVSFESLFYRPSGTLAVSDVQYLLTFAVMLTVGLV 569
F++V +F+ F P + +V+D QYLLTF ML LV
Sbjct: 461 FLSVAAFDYFFVPPRMSFSVTDTQYLLTFFGMLLTSLV 498
>UniRef50_Q3J7Q7 Cluster: Transposase; n=2; Bacteria|Rep:
Transposase - Nitrosococcus oceani (strain ATCC 19707 /
NCIMB 11848)
Length = 372
Score = 36.7 bits (81), Expect = 0.53
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -2
Query: 512 SGW--YEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRR 378
SGW ++++ + YK G V + P YTS+ C+ CGH K R+
Sbjct: 273 SGWSFFQLQSFIEYKAKLAGVFVQYIDPWYTSRTCSACGHADKANRK 319
>UniRef50_Q4BVL7 Cluster: Transposase, IS605 OrfB; n=1; Crocosphaera
watsonii WH 8501|Rep: Transposase, IS605 OrfB -
Crocosphaera watsonii
Length = 522
Score = 36.7 bits (81), Expect = 0.53
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRRRDNGQAAALFHVTRR 333
+ WY + +++ Y + G VL V P +TSQ C+ C + + R + HV
Sbjct: 359 ASWYSLTQKIEYMAVKSGKIVLRVNPRHTSQECSVCHYIDPDNREGEKFLCTNCGHVDDA 418
Query: 332 TKEAFRTMQGVGIHTTG 282
+A ++ I+ G
Sbjct: 419 NFQASINIKNKAINQYG 435
>UniRef50_A4XG02 Cluster: Transposase, IS605 OrfB family; n=2;
Firmicutes|Rep: Transposase, IS605 OrfB family -
Caldicellulosiruptor saccharolyticus (strain ATCC 43494
/ DSM 8903)
Length = 383
Score = 36.7 bits (81), Expect = 0.53
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 2/83 (2%)
Frame = -2
Query: 536 RLKPFDTGSGWYEMRRQLAYKQLWRGGQVLAVPPAY-TSQRCAYCGHTAKEKRRRDN-GQ 363
RL S W + R L YK W G +V+ ++ +S+ C+ CG+ KE + +D +
Sbjct: 295 RLSKHILDSSWSKFLRYLKYKADWYGRKVIEADRSFPSSKMCSRCGYINKELKLKDRVWK 354
Query: 362 AAALFHVTRRTKEAFRTMQGVGI 294
V R + A + ++ GI
Sbjct: 355 CPKCKAVHDRDENAAKNLKNYGI 377
>UniRef50_A1ZDT4 Cluster: Transposase, OrfB; n=4; Microscilla marina
ATCC 23134|Rep: Transposase, OrfB - Microscilla marina
ATCC 23134
Length = 378
Score = 36.7 bits (81), Expect = 0.53
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = -2
Query: 488 QLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRR 378
+L YK W + V P TSQ C+ CGH KE R+
Sbjct: 309 KLEYKSKWHERTFVKVNPKRTSQVCSECGHKDKESRK 345
>UniRef50_A1VS43 Cluster: Transposase, IS605 OrfB; n=2;
Proteobacteria|Rep: Transposase, IS605 OrfB -
Polaromonas naphthalenivorans (strain CJ2)
Length = 474
Score = 36.7 bits (81), Expect = 0.53
Identities = 18/44 (40%), Positives = 22/44 (50%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKR 381
S W +R YK R V V P ++SQ C+ CGHT E R
Sbjct: 348 SAWGRIRVMTQYKAARRNVLVGFVRPHHSSQECSLCGHTHPENR 391
>UniRef50_Q97A87 Cluster: Putative uncharacterized protein
TVG0952253; n=1; Thermoplasma volcanium|Rep: Putative
uncharacterized protein TVG0952253 - Thermoplasma
volcanium
Length = 127
Score = 36.7 bits (81), Expect = 0.53
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = -2
Query: 500 EMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKR 381
E+ + + YK G +V+ + P Y+ Q+C+ CG+ +KE R
Sbjct: 26 ELEKFIEYKAEDAGKKVIYINPKYSPQKCSRCGYVSKENR 65
>UniRef50_A7I8W2 Cluster: Transposase, IS605 OrfB family; n=1;
Candidatus Methanoregula boonei 6A8|Rep: Transposase,
IS605 OrfB family - Methanoregula boonei (strain 6A8)
Length = 251
Score = 36.7 bits (81), Expect = 0.53
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = -2
Query: 524 FDTGSGWYEMRRQLAYKQLWRGG-QVLAVPPAYTSQRCAYCGHTAKEKRRR 375
F +G + ++L K R G V+ V PAYTS+RC+ CG + R+R
Sbjct: 121 FSFANGSFFSLQRLVEKMAERKGIPVIYVNPAYTSKRCSRCGSMGRRSRKR 171
>UniRef50_Q8F319 Cluster: Flagellum-specific ATP synthase fliI; n=4;
Leptospira|Rep: Flagellum-specific ATP synthase fliI -
Leptospira interrogans
Length = 454
Score = 36.3 bits (80), Expect = 0.71
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +1
Query: 40 MVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHK 198
++ L+ ER EV E + L K V+A+T D P V A + A+ +
Sbjct: 198 VIALVGERGREVNEFIEIDLGKEGLKKSVVLAATSDAPKMEQVNCALLATSIAEYFRDQG 257
Query: 199 KDVIILLDSITRLARA 246
K V +++DS+TR A+A
Sbjct: 258 KHVNLMMDSLTRFAQA 273
>UniRef50_Q4MP02 Cluster: Transposase, putative; n=3; Bacillus
cereus group|Rep: Transposase, putative - Bacillus
cereus G9241
Length = 218
Score = 36.3 bits (80), Expect = 0.71
Identities = 13/46 (28%), Positives = 29/46 (63%)
Frame = -2
Query: 506 WYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRRRDN 369
+++++ ++ + G +V+ + P+YTSQRC+ CG+ K R+ +
Sbjct: 116 YFDLQEKIKNQANQYGIKVVKIDPSYTSQRCSECGYIHKNNRQNQS 161
>UniRef50_Q4C0Y0 Cluster: Transposase, IS605 OrfB; n=8;
Cyanobacteria|Rep: Transposase, IS605 OrfB -
Crocosphaera watsonii
Length = 362
Score = 36.3 bits (80), Expect = 0.71
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAY-TSQRCAYCGH 399
+ W E RQL YK W G +++ + + +S+RC CGH
Sbjct: 241 ASWGEFNRQLEYKCEWYGKELVKIDRYFPSSKRCGNCGH 279
>UniRef50_A6GN32 Cluster: Type III secretion protein; n=1;
Limnobacter sp. MED105|Rep: Type III secretion protein -
Limnobacter sp. MED105
Length = 461
Score = 36.3 bits (80), Expect = 0.71
Identities = 23/64 (35%), Positives = 35/64 (54%)
Frame = +1
Query: 67 EEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARA 246
+E+T+ R K V +T D A V+ A A+ L + K V++++DS+TRLARA
Sbjct: 219 KEITDEIRK-KSFFVCATSDRSAIERVRAAFTATSIAEYLRDQGKSVLLVVDSLTRLARA 277
Query: 247 YNTL 258
L
Sbjct: 278 QREL 281
>UniRef50_A0YME8 Cluster: Transposase; n=7; Lyngbya sp. PCC
8106|Rep: Transposase - Lyngbya sp. PCC 8106
Length = 395
Score = 36.3 bits (80), Expect = 0.71
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAY-TSQRCAYCGH 399
S YE+RRQ+ YK W G V+ Y +S+ C+ CGH
Sbjct: 282 SALYEIRRQVEYKANWYGSIVVFADRFYPSSKTCSNCGH 320
>UniRef50_A7SJB7 Cluster: Predicted protein; n=2; Nematostella
vectensis|Rep: Predicted protein - Nematostella
vectensis
Length = 1552
Score = 36.3 bits (80), Expect = 0.71
Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Frame = -3
Query: 493 AASLRISSSGVAVRCLLFRQRIQASVARTVVIQRKRSAVAIM----VRLPPSSTLRAAPK 326
AA+L++ + GV V L + +I AS+A T R + + + + K
Sbjct: 264 AAALKLKNMGVRVLMLGIKDKIDASLATTASQPPSRYFIQTLDYEELGVAAYEAADTVCK 323
Query: 325 KRFGRCRALASTPPVNTLPDAGTTC 251
R+G+C+A PP PD C
Sbjct: 324 ARYGKCQAFRPPPPAECPPDNADEC 348
>UniRef50_P0A1B9 Cluster: Probable ATP synthase spaL; n=32;
Proteobacteria|Rep: Probable ATP synthase spaL -
Salmonella typhimurium
Length = 431
Score = 36.3 bits (80), Expect = 0.71
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +1
Query: 34 VLMVLLIDERPEEVTEMQRLVKGE-------VVASTFDEPASRHVQVAEMVIEKAKRLVE 192
V ++ LI ER EVTE +++ +V +T D P+ A++ A+ +
Sbjct: 180 VFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDFPSVDRCNAAQLATTVAEYFRD 239
Query: 193 HKKDVIILLDSITRLARA 246
K V++ +DS+TR ARA
Sbjct: 240 QGKRVVLFIDSMTRYARA 257
>UniRef50_Q8R9Z1 Cluster: Flagellar biosynthesis/type III secretory
pathway ATPase; n=10; Bacteria|Rep: Flagellar
biosynthesis/type III secretory pathway ATPase -
Thermoanaerobacter tengcongensis
Length = 437
Score = 35.9 bits (79), Expect = 0.93
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Frame = +1
Query: 40 MVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHK 198
++ LI ER EV E + L + VV +T D PA V+ A A+ +
Sbjct: 189 VIALIGERGREVNEFIEKDLGEEGLKRSVVVVATSDTPALVRVKGAMTATAIAEYFRDQG 248
Query: 199 KDVIILLDSITRLARA 246
DV++++DSITR A A
Sbjct: 249 LDVLLMMDSITRFAMA 264
>UniRef50_A7HF03 Cluster: GAF sensor signal transduction histidine
kinase precursor; n=2; Anaeromyxobacter|Rep: GAF sensor
signal transduction histidine kinase precursor -
Anaeromyxobacter sp. Fw109-5
Length = 522
Score = 35.9 bits (79), Expect = 0.93
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = -3
Query: 673 VVSFESLFYRPSGTLAVSDVQYLLTFAVMLTVGLV 569
VVS++ F P TL +SD +YLLTFA++ + +V
Sbjct: 80 VVSYDFFFVPPPYTLDISDARYLLTFAMLFGLSVV 114
>UniRef50_A3IZ05 Cluster: Transposase; n=5; Chroococcales|Rep:
Transposase - Cyanothece sp. CCY 0110
Length = 500
Score = 35.9 bits (79), Expect = 0.93
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = -2
Query: 449 LAVPPAYTSQRCAYCGHTAKEKRRRD 372
L V P +TSQ+C++CGH K+ R ++
Sbjct: 391 LKVSPKFTSQKCSHCGHIEKKNRNKE 416
>UniRef50_Q97V25 Cluster: Transposase ISC1316; n=24; root|Rep:
Transposase ISC1316 - Sulfolobus solfataricus
Length = 411
Score = 35.9 bits (79), Expect = 0.93
Identities = 19/51 (37%), Positives = 29/51 (56%)
Frame = -2
Query: 539 IRLKPFDTGSGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKE 387
+R + D G G E+R L Y+ G +++ V PAYTS+ CA CG+ +
Sbjct: 295 LRRRLSDVGFG--ELRDVLKYQLEKYGKKLILVNPAYTSKTCARCGYVKND 343
>UniRef50_A7D6X9 Cluster: Transposase, IS605 OrfB family; n=1;
Halorubrum lacusprofundi ATCC 49239|Rep: Transposase,
IS605 OrfB family - Halorubrum lacusprofundi ATCC 49239
Length = 434
Score = 35.9 bits (79), Expect = 0.93
Identities = 17/34 (50%), Positives = 21/34 (61%)
Frame = -2
Query: 479 YKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRR 378
YK G +V V PAYTSQRC+ CG T + R+
Sbjct: 318 YKAEMIGIEVEQVSPAYTSQRCSSCGFTHETNRQ 351
>UniRef50_Q81SH1 Cluster: Flagellum-specific ATP synthase, putative;
n=20; Bacillales|Rep: Flagellum-specific ATP synthase,
putative - Bacillus anthracis
Length = 434
Score = 35.5 bits (78), Expect = 1.2
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Frame = +1
Query: 10 IAYNHPDCVLMVLLIDERPEEVTEMQRLVKGE-------VVASTFDEPASRHVQVAEMVI 168
IA N + ++ L+ ER EV + R GE VV +T DE ++ A++
Sbjct: 178 IAKNAKADINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRAAKLAT 237
Query: 169 EKAKRLVEHKKDVIILLDSITRLARA 246
A+ + +V++++DS+TR A A
Sbjct: 238 SIAEYFRDQGNNVLLMMDSVTRFADA 263
>UniRef50_A3EVE7 Cluster: Transposase; n=1; Leptospirillum sp. Group
II UBA|Rep: Transposase - Leptospirillum sp. Group II
UBA
Length = 406
Score = 35.5 bits (78), Expect = 1.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 506 WYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKR 381
+Y++ + YK G + VP AYT+Q C +CG K K+
Sbjct: 297 FYQLESFIKYKAAISGVLIQKVPAAYTTQACNHCGALNKRKK 338
>UniRef50_Q8PYT5 Cluster: Transposase; n=3; Methanosarcinaceae|Rep:
Transposase - Methanosarcina mazei (Methanosarcina
frisia)
Length = 366
Score = 35.5 bits (78), Expect = 1.2
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = -2
Query: 506 WYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKR 381
+Y++ + L YK G +V+ V P ++SQ+C+ CG K R
Sbjct: 280 FYQLAQFLEYKVETLGKRVIYVDPRFSSQKCSKCGDIRKSNR 321
>UniRef50_A6UTR1 Cluster: Transposase, IS605 OrfB family; n=6;
Euryarchaeota|Rep: Transposase, IS605 OrfB family -
Methanococcus aeolicus Nankai-3
Length = 424
Score = 35.5 bits (78), Expect = 1.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -2
Query: 506 WYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRRRD 372
W + L YK G +V+ + PAYTS++C CG R D
Sbjct: 298 WKKFINLLLYKAEGAGREVILINPAYTSKKCFNCGCVVSSLRLSD 342
>UniRef50_Q9RXX7 Cluster: Transposase, putative; n=4; Bacteria|Rep:
Transposase, putative - Deinococcus radiodurans
Length = 409
Score = 35.1 bits (77), Expect = 1.6
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAY-TSQRCAYCG 402
+GW E RQL YK W G V + P + +SQ C CG
Sbjct: 299 AGWGEFIRQLEYKATWYGRLVSKISPYFPSSQICHDCG 336
>UniRef50_Q5KY50 Cluster: Transposase; n=28; Bacillaceae|Rep:
Transposase - Geobacillus kaustophilus
Length = 370
Score = 35.1 bits (77), Expect = 1.6
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAY-TSQRCAYCGH 399
S W R L YK W G V+ V + +SQ C+ CGH
Sbjct: 290 SAWGSFLRMLEYKATWYGRTVVRVASTFPSSQLCSCCGH 328
>UniRef50_Q3J925 Cluster: Transposase, IS605 OrfB; n=1;
Nitrosococcus oceani ATCC 19707|Rep: Transposase, IS605
OrfB - Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848)
Length = 371
Score = 35.1 bits (77), Expect = 1.6
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -2
Query: 506 WYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCG 402
W E++ +AYK G +V+ V PAY+S+ C+ CG
Sbjct: 284 WRELQDFIAYKAEAAGIRVIYVNPAYSSKSCSACG 318
>UniRef50_Q6VRS9 Cluster: Transposase B-like protein; n=9;
Helicobacter|Rep: Transposase B-like protein -
Helicobacter pylori (Campylobacter pylori)
Length = 442
Score = 35.1 bits (77), Expect = 1.6
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGH 399
+ +Y++ L YKQ G ++ VPP YTS+ C CG+
Sbjct: 350 ASFYQIISFLDYKQQHNGKLLVKVPPQYTSKTCHCCGN 387
>UniRef50_Q1J2Y7 Cluster: Transposase, IS605 OrfB; n=1; Deinococcus
geothermalis DSM 11300|Rep: Transposase, IS605 OrfB -
Deinococcus geothermalis (strain DSM 11300)
Length = 168
Score = 35.1 bits (77), Expect = 1.6
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 509 GWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHT 396
GW + + L+ K G +V A+ P +TSQR CGHT
Sbjct: 70 GWGQFFQILSSKAAEAGRRVSAIDPRFTSQRRRICGHT 107
>UniRef50_A5D0F3 Cluster: Flagellar biosynthesis/type III secretory
pathway ATPase; n=4; Bacteria|Rep: Flagellar
biosynthesis/type III secretory pathway ATPase -
Pelotomaculum thermopropionicum SI
Length = 446
Score = 35.1 bits (77), Expect = 1.6
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Frame = +1
Query: 34 VLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 192
V ++ LI ER EV + + L + VV +T ++PA ++ A + A+ +
Sbjct: 191 VNVIGLIGERGREVLDFIETDLGPEGLARSVVVVATSEQPALVRLKGAFVACAVAEYFRD 250
Query: 193 HKKDVIILLDSITRLARA 246
+DV++++DSITR A A
Sbjct: 251 QGRDVLLMMDSITRFAMA 268
>UniRef50_A3SFS3 Cluster: Flagellum-specific ATP synthase; n=2;
Sulfitobacter|Rep: Flagellum-specific ATP synthase -
Sulfitobacter sp. EE-36
Length = 463
Score = 35.1 bits (77), Expect = 1.6
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 7/86 (8%)
Frame = +1
Query: 10 IAYNHPDCVLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVI 168
+A N V+++ LI ER EV + + + + VV ST DE Q A
Sbjct: 180 LARNTDADVIVIGLIGERGREVQQFIQEDLGEEGMARAVVVVSTGDEAPLLRKQAALTTT 239
Query: 169 EKAKRLVEHKKDVIILLDSITRLARA 246
A+ K V++LLDS+TR A A
Sbjct: 240 AIAEYFKSTGKQVLLLLDSVTRFAMA 265
>UniRef50_A1K9B0 Cluster: Sensor protein; n=1; Azoarcus sp.
BH72|Rep: Sensor protein - Azoarcus sp. (strain BH72)
Length = 472
Score = 35.1 bits (77), Expect = 1.6
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -3
Query: 682 FINVVSFESLFYRPSGTLAVSDVQYLLTFAVMLTVGLV 569
F N V + + P +D+QYL+T VMLTVGLV
Sbjct: 69 FANTVLLDYVIVPPHFAFIPTDLQYLVTLVVMLTVGLV 106
>UniRef50_A0YVR7 Cluster: Transposase; n=3; Cyanobacteria|Rep:
Transposase - Lyngbya sp. PCC 8106
Length = 428
Score = 35.1 bits (77), Expect = 1.6
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = -2
Query: 512 SGWYEMRRQLAY-KQLWRGGQVLAVPPAYTSQRCAYCGHTAKE 387
+ WY+ + L Y ++W G V++V P +TSQ C+ CG K+
Sbjct: 288 ASWYQFTQWLDYFGKIW-GKTVVSVSPHFTSQDCSNCGFRVKK 329
>UniRef50_Q3IRT6 Cluster: IS1341-type transposase; n=2; Natronomonas
pharaonis DSM 2160|Rep: IS1341-type transposase -
Natronomonas pharaonis (strain DSM 2160 / ATCC 35678)
Length = 430
Score = 35.1 bits (77), Expect = 1.6
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = -2
Query: 497 MRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKR 381
++ Q +K G V V P+YTSQ+C+ CG T +E R
Sbjct: 308 LQEQTEHKAEMAGIVVKTVEPSYTSQQCSKCGCTLEENR 346
>UniRef50_Q4BY36 Cluster: Transposase, IS605 OrfB; n=2; Crocosphaera
watsonii WH 8501|Rep: Transposase, IS605 OrfB -
Crocosphaera watsonii
Length = 140
Score = 34.7 bits (76), Expect = 2.2
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = -2
Query: 536 RLKPFDTGSGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKE 387
RL + +GW+ RR L Y G A+PP TSQ C+ CG ++
Sbjct: 11 RLSKSISDAGWFLFRRWLEYFADKYGKIAKAIPPHGTSQICSNCGQKVEK 60
>UniRef50_Q46219 Cluster: IS1136 DNA; n=12; Bacteria|Rep: IS1136 DNA
- Clostridium perfringens
Length = 122
Score = 34.7 bits (76), Expect = 2.2
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Frame = -2
Query: 509 GWYEMRRQLAYKQLWRGGQVLAVPPAY-TSQRCAYCGHTAKEKRRRD 372
G+YE +RQL YK + G +++ Y +S+ C+ CG K+ + +D
Sbjct: 49 GFYEFKRQLEYKCKFIGIELVVADRFYPSSKTCSQCGEIKKDLKLKD 95
>UniRef50_Q3W754 Cluster: Transposase (Probable),
IS891/IS1136/IS1341:Transposase, IS605 OrfB; n=1;
Frankia sp. EAN1pec|Rep: Transposase (Probable),
IS891/IS1136/IS1341:Transposase, IS605 OrfB - Frankia
sp. EAN1pec
Length = 360
Score = 34.7 bits (76), Expect = 2.2
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRR 378
+GW L K G V+ VP A TS+ CA CGH + RR
Sbjct: 279 AGWGVFLAVLRAKAESAGRTVVEVPSADTSRTCAVCGHCHADNRR 323
>UniRef50_A7BXB2 Cluster: Transposase; n=1; Beggiatoa sp. PS|Rep:
Transposase - Beggiatoa sp. PS
Length = 326
Score = 34.7 bits (76), Expect = 2.2
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = -2
Query: 509 GWYEMRRQLAYKQLWRGGQVLAVPPAY-TSQRCAYCGH 399
G+YE +RQL YK + G + V + +S+ C++CGH
Sbjct: 249 GFYEFKRQLEYKAIVFGNWISKVGQWFPSSKTCSFCGH 286
>UniRef50_Q22T03 Cluster: DEAD/DEAH box helicase family protein;
n=1; Tetrahymena thermophila SB210|Rep: DEAD/DEAH box
helicase family protein - Tetrahymena thermophila SB210
Length = 643
Score = 34.7 bits (76), Expect = 2.2
Identities = 18/56 (32%), Positives = 34/56 (60%)
Frame = +1
Query: 43 VLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 210
V L E ++ E + V+ EVV +E A R ++ AEM ++KA+ +++HK +++
Sbjct: 559 VSLSVETLQKYKEKIQNVEREVVKVLEEEQAERQLRKAEMELQKAENMIKHKDEIM 614
>UniRef50_Q8PRS0 Cluster: Transposase; n=2; cellular organisms|Rep:
Transposase - Methanosarcina mazei (Methanosarcina
frisia)
Length = 373
Score = 34.7 bits (76), Expect = 2.2
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 506 WYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEK 384
W ++ +YK W G +V V P TSQ C+ CG K++
Sbjct: 290 WNKLVTITSYKAEWAGKRVELVNPCNTSQMCSGCGEIVKKE 330
>UniRef50_A3H5U5 Cluster: Transposase, IS605 OrfB family; n=13;
root|Rep: Transposase, IS605 OrfB family - Caldivirga
maquilingensis IC-167
Length = 409
Score = 34.7 bits (76), Expect = 2.2
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = -2
Query: 485 LAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRRR 375
+ ++ L RG +V+ V PAYTS +C CG +E R R
Sbjct: 322 IEWQALKRGLKVIYVNPAYTSTQCPKCGVEMREVRHR 358
>UniRef50_UPI0000E1FBFC Cluster: PREDICTED: hypothetical protein;
n=1; Pan troglodytes|Rep: PREDICTED: hypothetical
protein - Pan troglodytes
Length = 216
Score = 34.3 bits (75), Expect = 2.9
Identities = 30/89 (33%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Frame = -3
Query: 499 KCAASLRISSSGVAV---RCLLFRQRIQASVARTVVIQRKRSAVAIMVR---LPPSSTLR 338
K AA R +++G CLL R+ + R + +R R+A ++ R + LR
Sbjct: 118 KTAAPPRYAATGFGAWTPTCLLSRRDSR----RRSLTRRNRAANSLTSRDAQAAQARILR 173
Query: 337 AAPKKRFGRCRALASTPPVNTLPDAGTTC 251
+ + GRC L TPP T DAGTTC
Sbjct: 174 SRGRDNSGRCAPLGRTPP--TRRDAGTTC 200
>UniRef50_Q3WA72 Cluster: Transposase (Probable),
IS891/IS1136/IS1341:Transposase, IS605 OrfB; n=8;
Frankia sp. EAN1pec|Rep: Transposase (Probable),
IS891/IS1136/IS1341:Transposase, IS605 OrfB - Frankia
sp. EAN1pec
Length = 517
Score = 34.3 bits (75), Expect = 2.9
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = -2
Query: 458 GQVLAVPPAYTSQRCAYCGHTAKEKR 381
G+V +P AYTSQRC+ CG A R
Sbjct: 281 GRVEKIPAAYTSQRCSACGQVAPGNR 306
>UniRef50_A6AXF1 Cluster: VcsN2; n=7; Vibrio|Rep: VcsN2 - Vibrio
parahaemolyticus AQ3810
Length = 420
Score = 34.3 bits (75), Expect = 2.9
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 8/98 (8%)
Frame = +1
Query: 7 SIAYNHPDC-VLMVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEM 162
SI N+ D V++ +I ER EV E + + K + ST + V+ +
Sbjct: 164 SIMANNMDADVVIFAMIGERAREVVEFLEGEIGPEVIRKSITIVSTSEANPLEKVRSGLV 223
Query: 163 VIEKAKRLVEHKKDVIILLDSITRLARAYNTLFRRQVK 276
+ A+ +E K V++ DS+TR ARA L +K
Sbjct: 224 AVSIARYYMEQGKKVVLYFDSLTRFARAQAMLDGTPIK 261
>UniRef50_P23445 Cluster: Flagellum-specific ATP synthase; n=18;
Bacteria|Rep: Flagellum-specific ATP synthase - Bacillus
subtilis
Length = 440
Score = 34.3 bits (75), Expect = 2.9
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Frame = +1
Query: 40 MVLLIDERPEEVTEM-------QRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHK 198
++ L+ ER EV E + L + VV +T D+PA ++ A A+ +
Sbjct: 190 VIALVGERGREVREFIEKDLGKEGLKRSIVVVATSDQPALMRLKAAYTATAIAEYFRDKG 249
Query: 199 KDVIILLDSITRLARA 246
++V+ ++DS+TR+A A
Sbjct: 250 QNVMFMMDSVTRVAMA 265
>UniRef50_Q74KQ9 Cluster: Transposase; n=2; Lactobacillus|Rep:
Transposase - Lactobacillus johnsonii
Length = 445
Score = 33.9 bits (74), Expect = 3.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGH 399
+GW L YK G + + + P +T+QRC CG+
Sbjct: 354 AGWRSFLTMLEYKADLHGKKFVTIDPKFTTQRCHNCGN 391
>UniRef50_Q6A4I0 Cluster: Putative uncharacterized protein ORFB;
n=32; Campylobacterales|Rep: Putative uncharacterized
protein ORFB - Campylobacter jejuni
Length = 427
Score = 33.9 bits (74), Expect = 3.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -2
Query: 506 WYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKE 387
++E +R LAYK +RG +V+ Y S + +C KE
Sbjct: 313 FFEFKRMLAYKSAYRGNEVIEADRFYPSSKTCHCCGYKKE 352
>UniRef50_Q3JDS4 Cluster: Transposase; n=11; Nitrosococcus oceani
ATCC 19707|Rep: Transposase - Nitrosococcus oceani
(strain ATCC 19707 / NCIMB 11848)
Length = 450
Score = 33.5 bits (73), Expect = 5.0
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = -2
Query: 509 GWYEMRRQLAYKQLWRGGQVLAVPP-AYTSQRCAYCGHTAK 390
G +E++RQ+ YK W G + V A TS+ C+ CG K
Sbjct: 356 GMHELKRQMEYKAKWYGREFRQVDRWAPTSKTCSVCGAVQK 396
>UniRef50_Q313A0 Cluster: Nitroreductase family protein; n=1;
Desulfovibrio desulfuricans G20|Rep: Nitroreductase
family protein - Desulfovibrio desulfuricans (strain
G20)
Length = 278
Score = 33.5 bits (73), Expect = 5.0
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = -3
Query: 175 PSRSPFPQPERGEMRVRQR*KQQLHLLPDAASRLLLPDVRRSAEPSAHNPGGCKQ 11
P ++ FPQPE E+ ++ R + LP+A L +RR+ + +AH P G Q
Sbjct: 70 PLKNRFPQPEALEILMKGR-RSVRRFLPEAVDSAL---IRRTVDAAAHAPSGKNQ 120
>UniRef50_Q9HKW8 Cluster: Transposase related protein; n=2;
Thermoplasmatales|Rep: Transposase related protein -
Thermoplasma acidophilum
Length = 350
Score = 33.5 bits (73), Expect = 5.0
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Frame = -2
Query: 530 KPFDTG-SGW--YEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGH 399
KPF G + W Y++ + YK G + V P YTS+ C+ CG+
Sbjct: 233 KPFKYGLNSWSFYQLEFFIQYKAKMNGIPLTYVDPRYTSKECSRCGY 279
>UniRef50_Q24509 Cluster: Syntaxin-5; n=8; Eumetazoa|Rep: Syntaxin-5
- Drosophila melanogaster (Fruit fly)
Length = 467
Score = 33.5 bits (73), Expect = 5.0
Identities = 15/59 (25%), Positives = 30/59 (50%)
Frame = +1
Query: 49 LIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDS 225
L D+RP+E+ E+ ++KG++ A + + + K LV H ++++ L S
Sbjct: 230 LFDDRPQEIQELTYIIKGDLNALNQQIARLQDISKDQRRHTNGKHLVSHSSNMVLALQS 288
>UniRef50_Q6KBZ2 Cluster: Sensor protein; n=1; Alicyclobacillus
acidocaldarius subsp. acidocaldarius|Rep: Sensor protein
- Alicyclobacillus acidocaldarius (Bacillus
acidocaldarius)
Length = 530
Score = 33.1 bits (72), Expect = 6.6
Identities = 14/36 (38%), Positives = 25/36 (69%)
Frame = -3
Query: 679 INVVSFESLFYRPSGTLAVSDVQYLLTFAVMLTVGL 572
+ ++SF+ F P + AVSD+++L++FAV L V +
Sbjct: 90 LGLMSFDFFFVPPIFSYAVSDLRFLVSFAVFLVVAI 125
>UniRef50_Q4VR80 Cluster: Transposase; n=14; Campylobacterales|Rep:
Transposase - Campylobacter jejuni
Length = 412
Score = 33.1 bits (72), Expect = 6.6
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRRRD 372
+ +Y+ L YK G +PP YTS+ C+ CG + R D
Sbjct: 319 TSFYQFLSFLEYKTSHNGKIFTKIPPQYTSKTCSKCGSIKADLRLSD 365
>UniRef50_Q1VMR6 Cluster: Putative uncharacterized protein; n=1;
Psychroflexus torquis ATCC 700755|Rep: Putative
uncharacterized protein - Psychroflexus torquis ATCC
700755
Length = 361
Score = 33.1 bits (72), Expect = 6.6
Identities = 20/43 (46%), Positives = 26/43 (60%)
Frame = +1
Query: 475 LYASWRRISYQPDPVSNGLSLITHASSKVPDSPARRLTSPRRS 603
LYA W + QP P+S+ IT+AS D+P+ RL SPR S
Sbjct: 78 LYA-WF-VGGQPGPISDSKK-ITYASDTAADNPSSRLPSPRSS 117
>UniRef50_A1SEP6 Cluster: ATPase, FliI/YscN family; n=10;
Bacteria|Rep: ATPase, FliI/YscN family - Nocardioides
sp. (strain BAA-499 / JS614)
Length = 435
Score = 33.1 bits (72), Expect = 6.6
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Frame = +1
Query: 34 VLMVLLIDERPEEVTEMQR-------LVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVE 192
+ ++ LI ER EV E L + VV +T DEP ++ A + A+ +
Sbjct: 185 ISVIALIGERGREVREFLENDLGPAGLRRSIVVVATSDEPPVVRLRAAFVATRIAEWFRD 244
Query: 193 HKKDVIILLDSITRLARA 246
+ V++++DS+TR+A A
Sbjct: 245 SGRHVVLMMDSLTRVALA 262
>UniRef50_A0ZI33 Cluster: Transposase; n=2; Cyanobacteria|Rep:
Transposase - Nodularia spumigena CCY 9414
Length = 394
Score = 33.1 bits (72), Expect = 6.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKE 387
+ WY R+ + Y G +AV P YTSQ+C+ C K+
Sbjct: 293 ASWYLFRQWIEYFAGKFGKLAIAVAPHYTSQKCSNCDAIVKK 334
>UniRef50_A0H2C9 Cluster: Transposase IS200-like; n=1; Chloroflexus
aggregans DSM 9485|Rep: Transposase IS200-like -
Chloroflexus aggregans DSM 9485
Length = 176
Score = 33.1 bits (72), Expect = 6.6
Identities = 13/17 (76%), Positives = 13/17 (76%)
Frame = -2
Query: 428 TSQRCAYCGHTAKEKRR 378
TSQRC CGH AKE RR
Sbjct: 100 TSQRCVACGHIAKENRR 116
>UniRef50_Q3IM28 Cluster: IS1341-type transposase; n=4;
Halobacteriaceae|Rep: IS1341-type transposase -
Natronomonas pharaonis (strain DSM 2160 / ATCC 35678)
Length = 426
Score = 33.1 bits (72), Expect = 6.6
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -2
Query: 509 GWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCG-HTAKEKRRRDNGQAAALFHVTR 336
GW + R L + G V+ V PA T++ CA CG TAK R++ A F + R
Sbjct: 306 GWRDFIRILKHHGRKHGCHVVEVEPAGTTKECASCGVETAKPLWVREHSCPACGFELGR 364
>UniRef50_A3CUW2 Cluster: Transcriptional regulator, TrmB; n=1;
Methanoculleus marisnigri JR1|Rep: Transcriptional
regulator, TrmB - Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1)
Length = 182
Score = 33.1 bits (72), Expect = 6.6
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Frame = +3
Query: 216 ARLHHSSGARLQHVVPASGKVLTGGVDANA--LHRPKR-------FFGAARNVEEGGSLT 368
A L GAR++ ++ A L GGV A A L P R G V EG +
Sbjct: 82 ALLQPHGGARIRILLAAGLASLAGGVCALAAFLTAPVREEPVPPLAGGGGIPVPEGAPVE 141
Query: 369 IIATALLFRCMTTVRATLACIRWRNSKHLTATPE 470
++ + + T AC+RWRN+ T P+
Sbjct: 142 LLVAGIALMVIGFFLVTYACVRWRNTCAATQFPD 175
>UniRef50_Q5KY43 Cluster: Transposase; n=6; Geobacillus
kaustophilus|Rep: Transposase - Geobacillus kaustophilus
Length = 351
Score = 32.7 bits (71), Expect = 8.7
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -2
Query: 506 WYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKR 381
+++++ +AYK G +V V P YTSQ C CG+ K R
Sbjct: 278 FHQLQTMIAYKAEMAGIRVEWVKPTYTSQTCK-CGYREKANR 318
>UniRef50_Q1GNY4 Cluster: ATPase FliI/YscN; n=6; Bacteria|Rep:
ATPase FliI/YscN - Sphingopyxis alaskensis (Sphingomonas
alaskensis)
Length = 443
Score = 32.7 bits (71), Expect = 8.7
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Frame = +1
Query: 4 QSIAYNHPDCVLMVLLIDERPEEVTEMQRLV-------KGEVVASTFDEPASRHVQVAEM 162
Q IA D V++V LI ER EV++ K VVA D P ++ A
Sbjct: 182 QMIAGTECD-VIVVGLIGERSREVSDFVETKLPPDVRKKSVVVAVPADHPPLLRLRAAMR 240
Query: 163 VIEKAKRLVEHKKDVIILLDSITRLARA 246
A+ K V++L+DS+TR+A A
Sbjct: 241 ATAIAEAFRAEGKKVLLLIDSLTRVAHA 268
>UniRef50_O31034 Cluster: Hypothetical 21 kDa protein; n=1;
Mycobacterium genavense|Rep: Hypothetical 21 kDa protein
- Mycobacterium genavense
Length = 190
Score = 32.7 bits (71), Expect = 8.7
Identities = 18/39 (46%), Positives = 22/39 (56%)
Frame = +2
Query: 542 RTPAVRFPIHQPDG*HHREGQQILHIRDGERAAGAIKKR 658
RTP VR P +P G +R G + LH+R RAA K R
Sbjct: 87 RTPRVRVPRRRPGG-AYRHGPRRLHLRPTVRAASGRKPR 124
>UniRef50_A7NKZ2 Cluster: Transposase, IS605 OrfB family; n=2;
Roseiflexus castenholzii DSM 13941|Rep: Transposase,
IS605 OrfB family - Roseiflexus castenholzii DSM 13941
Length = 380
Score = 32.7 bits (71), Expect = 8.7
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 512 SGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGH 399
+GW R+L K G VL V P TS+ C+ CGH
Sbjct: 288 AGWGCFVRRLTSKAAEAGRVVLLVDPRNTSKTCSRCGH 325
>UniRef50_A5EBL0 Cluster: Putative uncharacterized protein; n=1;
Bradyrhizobium sp. BTAi1|Rep: Putative uncharacterized
protein - Bradyrhizobium sp. (strain BTAi1 / ATCC
BAA-1182)
Length = 589
Score = 32.7 bits (71), Expect = 8.7
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -2
Query: 605 ADLRGDVNRRAGESGTLLLACVIRLKPFDTGSGWYEMRRQLA 480
A LR ++ R G LLL + L+ D G+GW + RR LA
Sbjct: 377 AALRPRLSARQGVYAGLLLGALTLLRCLDIGAGWIDHRRDLA 418
>UniRef50_A4S5T7 Cluster: Predicted protein; n=2; Ostreococcus|Rep:
Predicted protein - Ostreococcus lucimarinus CCE9901
Length = 187
Score = 32.7 bits (71), Expect = 8.7
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = -3
Query: 364 RLPPSSTLRAAPKKRFGRCRALASTPPVNTLPDA 263
R PPS +L AP+ R GR R + P LPDA
Sbjct: 22 RAPPSLSLSRAPRARSGRFRRHPPSRPPRALPDA 55
>UniRef50_Q8TMG6 Cluster: Transposase; n=1; Methanosarcina
acetivorans|Rep: Transposase - Methanosarcina
acetivorans
Length = 512
Score = 32.7 bits (71), Expect = 8.7
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = -2
Query: 506 WYEMRRQLAYKQLWRGGQVLAVPPAYTSQRCAYCGHTAKEKRR 378
++++++ + YK +G +V+ + P TS+RC+ CG T + +
Sbjct: 394 FHQLQQFIEYKARLQGVEVVYIDPHATSKRCSRCGLTGNRRSK 436
>UniRef50_Q9P7Q7 Cluster: Peroxide stress-activated histidine kinase
mak1; n=1; Schizosaccharomyces pombe|Rep: Peroxide
stress-activated histidine kinase mak1 -
Schizosaccharomyces pombe (Fission yeast)
Length = 1639
Score = 32.7 bits (71), Expect = 8.7
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = -2
Query: 671 SEFRISFLSPQRHARRL*CAISADLRGDVNRRAGESGTLLLACVIRLKPFDTGSGWY 501
S + FLS HA R C + L G N + +GT A IR + D W+
Sbjct: 889 SSLGLGFLSAVYHADRKKCLLPESLEGTFNNQDESNGTKTFAAEIRFRSTDGHYRWH 945
>UniRef50_Q32M07 Cluster: Putative adenylate kinase-like protein
C9orf98 homolog; n=9; Amniota|Rep: Putative adenylate
kinase-like protein C9orf98 homolog - Mus musculus
(Mouse)
Length = 479
Score = 32.7 bits (71), Expect = 8.7
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Frame = +1
Query: 10 IAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQ----VAEMV--IE 171
I N PD VL+ + +R + VT GE+ +TFD P +Q E + IE
Sbjct: 162 IVLNAPDTVLIERNVGKRIDPVT-------GEIYHTTFDWPPEPEIQNRLRQPEGISEIE 214
Query: 172 KAKRLVEHKKDVIILLDSITRLARAYNT 255
AK+L+E+ + +I +L S ++ + ++
Sbjct: 215 TAKKLLEYHRHIIRILPSYPKILKTISS 242
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 761,085,120
Number of Sequences: 1657284
Number of extensions: 17153321
Number of successful extensions: 57129
Number of sequences better than 10.0: 172
Number of HSP's better than 10.0 without gapping: 54231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57077
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54132236449
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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