Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0868
(690 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces... 33 0.051
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 28 1.5
SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme ... 27 1.9
SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1 |Schizosacchar... 26 4.5
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 26 5.9
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 25 7.8
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 25 7.8
SPAC17H9.07 |||signal recognition particle subunit Srp21 |Schizo... 25 7.8
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 25 7.8
>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1639
Score = 32.7 bits (71), Expect = 0.051
Identities = 18/57 (31%), Positives = 24/57 (42%)
Frame = -2
Query: 671 SEFRISFLSPQRHARRL*CAISADLRGDVNRRAGESGTLLLACVIRLKPFDTGSGWY 501
S + FLS HA R C + L G N + +GT A IR + D W+
Sbjct: 889 SSLGLGFLSAVYHADRKKCLLPESLEGTFNNQDESNGTKTFAAEIRFRSTDGHYRWH 945
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 27.9 bits (59), Expect = 1.5
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 300 WHPHHRSTLYLTPEQRV 250
WHP H +TLY+T + +
Sbjct: 350 WHPEHANTLYITGKNHI 366
>SPBC1604.21c |ptr3|uba1, SPBC211.09|ubiquitin activating enzyme
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1012
Score = 27.5 bits (58), Expect = 1.9
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Frame = +1
Query: 16 YNHPDCVLMVLLIDERPEEVTEMQRLVKG-EVVASTFDEP---ASR-HVQVAEMVIEKAK 180
YN PDC L L+ + EE E+ L G ++ + F P A R ++++E+V + K
Sbjct: 920 YNLPDCTLQELIDYFQKEEGLEVTMLSSGVSLLYANFQPPKKLAERLPLKISELVEQITK 979
Query: 181 RLVEHKKDVIIL 216
+ +E + ++L
Sbjct: 980 KKLEPFRKHLVL 991
>SPAC23C11.03 |||U3 snoRNP-associated protein Mpp1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +1
Query: 67 EEVTE-MQRLVKGEVVASTFDE-PASRHVQVAEMVIEKAKRLVEHK 198
EE TE ++ L+K +++ TFD+ P V V E + L E+K
Sbjct: 359 EETTETLEDLIKNRIISKTFDDVPKRAPVAVTEFRPSELFELNENK 404
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.8 bits (54), Expect = 5.9
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 297 HPHHRSTLYLTPEQRVVSARQTSDGVEQNDNVFLVLNQAFGL 172
H H+ STL TP +R A V+ DN++ V+ F +
Sbjct: 536 HQHYGSTLNSTPHRRNSIALSNRAHVKLIDNIWTVIYFIFNV 577
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 172 KAKRLVEHKKDVIILLDSITRLARAYNTLFRRQVK 276
+A+RL E +K+V I + R YN L Q+K
Sbjct: 284 EARRLAESQKEVFIGVVPSLRRNHLYNDLISAQIK 318
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/41 (31%), Positives = 23/41 (56%)
Frame = -2
Query: 224 ESSRMITSFLCSTRRLAFSITISAT*TWRDAGSSKVEATTS 102
E++ +T+ CS+R T+S T T ++GSS T++
Sbjct: 569 ETTTTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITST 609
>SPAC17H9.07 |||signal recognition particle subunit Srp21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 25.4 bits (53), Expect = 7.8
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = -3
Query: 475 SSSGVAVRCLLFRQRIQASVARTVVIQRKRSAVAIMVRLPPSSTLRAAPKKRFGRCRALA 296
S+SG+ CL +R A + R ++I K S V+ +PP + +A
Sbjct: 48 SASGI---CLKYRTDKAAELGRLLLIANKLSYVSTGNEIPPEPEQEVVASPVTEQKKAEP 104
Query: 295 STPP 284
S PP
Sbjct: 105 SAPP 108
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 246 LQHVVPASGKVLTGGVDANA--LHRPKRFFG 332
L+ P+SGK+L GVD + +H+ + FG
Sbjct: 531 LRFYAPSSGKILADGVDISTYNVHQWRSHFG 561
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,949,268
Number of Sequences: 5004
Number of extensions: 62407
Number of successful extensions: 184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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