Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0868
(690 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0203 - 15417743-15417997,15418708-15419159,15419234-15419636 31 0.86
05_07_0067 + 27463703-27463705,27464309-27464365,27464779-274648... 30 1.5
11_05_0062 + 18749405-18749449,18751328-18751465,18752625-187526... 29 3.5
06_01_0838 - 6360232-6360460,6360571-6360719,6360825-6360933,636... 29 3.5
05_07_0066 + 27453611-27453627,27454729-27454872,27455998-274566... 29 3.5
04_04_0124 + 22929700-22929761,22930192-22930310,22930459-229305... 29 3.5
04_01_0470 - 6062054-6062134,6062262-6062528,6062578-6062583 29 3.5
01_05_0018 - 17208358-17208367,17208485-17208537,17209321-172093... 29 3.5
09_04_0515 + 18238434-18238545,18238659-18238709,18238844-182388... 29 4.6
03_05_0339 + 23287620-23287676,23287784-23287849,23287937-232880... 29 4.6
07_01_1217 - 11624586-11624936,11625311-11625424,11625495-116255... 28 6.1
04_04_0828 - 28473753-28474801,28474956-28475096,28475203-28475554 28 6.1
12_02_1167 + 26647293-26648356,26648493-26648577,26649129-266491... 28 8.0
06_01_0310 - 2240745-2242130 28 8.0
04_04_1331 - 32706043-32707248,32707411-32707652,32707737-327085... 28 8.0
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 28 8.0
>03_03_0203 - 15417743-15417997,15418708-15419159,15419234-15419636
Length = 369
Score = 31.1 bits (67), Expect = 0.86
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -2
Query: 467 WRGG--QVLAVPPAYTSQRCAYCGHTAKEKRRRDNG 366
W GG LAVPP S RCA C + +RR +G
Sbjct: 12 WCGGCGAYLAVPPGARSVRCALCRAVTRVERRGHHG 47
>05_07_0067 +
27463703-27463705,27464309-27464365,27464779-27464844,
27464985-27465096,27465281-27465409,27466076-27466191,
27466364-27466440,27466678-27467163,27467255-27467570,
27467618-27467797
Length = 513
Score = 30.3 bits (65), Expect = 1.5
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Frame = +1
Query: 4 QSIAYNHPDCVLM---VLLIDERPEEVTEMQRLVKGEVVASTFDEPAS---RHVQVAEMV 165
+ + YN P+ + +L I+ E E LV G +ASTFD P S H +V E +
Sbjct: 263 RQLIYNFPEELFADAGILAIEHADFEGIERLALVTGGDIASTFDNPESVKLGHCKVIEEI 322
Query: 166 IEKAKRLV 189
+ RL+
Sbjct: 323 MIGEDRLI 330
>11_05_0062 +
18749405-18749449,18751328-18751465,18752625-18752675,
18752905-18753014,18753483-18753522,18753758-18753807,
18754066-18754114,18754212-18754256
Length = 175
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -1
Query: 90 TLHLGYFFRTFVDQQNHQHTIRVVVSNALS 1
+ HLG + F+ QN+ IR+V+ +ALS
Sbjct: 31 SFHLGRYCAKFIPNQNYPFPIRIVMLSALS 60
>06_01_0838 -
6360232-6360460,6360571-6360719,6360825-6360933,
6361446-6362276,6362865-6362969,6363084-6363180,
6363303-6363341,6363435-6363477
Length = 533
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Frame = -2
Query: 467 WRGGQVLAVPP-AYTSQRCAYCGHTAKEKRRR 375
W G++ P YT AY G TAK K++R
Sbjct: 422 WNEGKICFAPTYKYTHNSDAYAGETAKSKKKR 453
>05_07_0066 +
27453611-27453627,27454729-27454872,27455998-27456690,
27457700-27458111,27458220-27458297,27458938-27458953,
27459038-27459192
Length = 504
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = -3
Query: 436 QRIQASVARTVVIQRKRSAVAIMVRLPPSST 344
QR QA+ A V IQR+ SA A + PPS+T
Sbjct: 219 QRRQAAAAAGVKIQRRSSAPAEKLMPPPSTT 249
>04_04_0124 +
22929700-22929761,22930192-22930310,22930459-22930541,
22930640-22930738,22930769-22930786,22931044-22931110,
22931244-22931319,22931450-22931516,22932303-22932520,
22933124-22933191,22933743-22933822,22934362-22934448,
22934524-22934631,22934753-22934848,22935045-22935140,
22936826-22937155
Length = 557
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Frame = -3
Query: 541 LSGLNRSILDQAGMKCAASLRISSS---GVAVRCLLFRQRIQASVARTVVIQRKRSAVAI 371
+SGLNR I QAG+ ++ ++ G + LL + + T + + ++ +
Sbjct: 240 ISGLNRDIFSQAGVTIGGGIQTDAAINPGNSGGPLLDSKGHMIGI-NTAIFTQTGTSAGV 298
Query: 370 MVRLPPSSTLRAAPKK-RFGRCR 305
+P S+ L+ AP+ +FG+ R
Sbjct: 299 GFAIPSSTVLKIAPQLIQFGKVR 321
>04_01_0470 - 6062054-6062134,6062262-6062528,6062578-6062583
Length = 117
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Frame = -1
Query: 369 WSGCRPLPRYAPHQRSVSD--DAGRWHPHHRSTL 274
WS RP RY +R SD W P H +T+
Sbjct: 16 WSAARPCSRYTTMRRRGSDATSPNSWRPPHMATI 49
>01_05_0018 -
17208358-17208367,17208485-17208537,17209321-17209383,
17209971-17210045,17210090-17210104,17210983-17211045,
17211129-17211218,17211396-17211714,17211814-17211860,
17211949-17212054,17212539-17212592,17212806-17212912,
17212996-17213160,17213383-17213476,17213572-17213636,
17213841-17213969
Length = 484
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/70 (28%), Positives = 28/70 (40%)
Frame = -1
Query: 297 HPHHRSTLYLTPEQRVVSARQTSDGVEQNDNVFLVLNQAFGLLDHHFRNLNVARCGFVKG 118
HP HR+ T +S G QN +V + L + F + N+ CG + G
Sbjct: 331 HPQHRAISTSTVADLGPGIASSSTGRYQNLHVPVTLMECFLRVAEANTANNLETCGILAG 390
Query: 117 RSNNFTFYQT 88
TFY T
Sbjct: 391 TLKKRTFYVT 400
>09_04_0515 +
18238434-18238545,18238659-18238709,18238844-18238897,
18239727-18239777,18239845-18239895,18240056-18240210,
18240550-18240663,18240873-18240938,18241478-18241561,
18241640-18241726,18241975-18242066,18242163-18242223,
18242475-18242531,18243129-18243220,18243394-18243584,
18244203-18244321,18244518-18244589,18244699-18244784,
18244866-18244962,18245488-18245622
Length = 608
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/55 (23%), Positives = 28/55 (50%)
Frame = +1
Query: 460 PRQSCLYASWRRISYQPDPVSNGLSLITHASSKVPDSPARRLTSPRRSADIAHQR 624
PR + +W+R S + P +G++ + + S ++P A R + +++H R
Sbjct: 51 PRSAGRGRTWKRDSPEAPPRRSGITRVPNRSPEMPTERAGRTKVSNVNLEVSHHR 105
>03_05_0339 +
23287620-23287676,23287784-23287849,23287937-23288048,
23288240-23288368,23288795-23288866,23289245-23289360,
23289494-23289570,23289788-23290273,23290373-23290688,
23290769-23290915
Length = 525
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Frame = +1
Query: 4 QSIAYNHPDCVLM---VLLIDERPEEVTEMQRLVKGEVVASTFDEPAS---RHVQVAEMV 165
+ + YN P+ + +L I+ E E LV G +ASTFD P S H V E +
Sbjct: 286 RQLIYNFPEELFADAGILAIEHADFEGIERLALVTGGDIASTFDNPESVKLGHCNVIEEI 345
Query: 166 IEKAKRLV 189
+ +L+
Sbjct: 346 MIGEDKLI 353
>07_01_1217 -
11624586-11624936,11625311-11625424,11625495-11625576,
11626762-11626845,11627430-11627639,11627756-11628099,
11628215-11628331
Length = 433
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/53 (35%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Frame = +2
Query: 236 WRALTTRCSGVR*S---VDRWCGCQRPASSETLLWCGA*RGRGRQPDHYRDGA 385
W T C V + V CG RPA G RGRGR D R G+
Sbjct: 148 WLCPNTSCGNVNFAFRGVCNLCGAARPAGVSGSSAGGGGRGRGRGSDDARGGS 200
>04_04_0828 - 28473753-28474801,28474956-28475096,28475203-28475554
Length = 513
Score = 28.3 bits (60), Expect = 6.1
Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Frame = -3
Query: 598 FAVMLTVGLVNRE-PYCWRALSGLNRSILDQAGMKCAASLRISSSGVAVRCLLFRQRIQA 422
+A VG R YC ALSG RS Q+ L +S+ VA RC + +
Sbjct: 319 YAQYKAVGAAMRHCAYCVEALSGCIRSAEAQSPEGVNRHLAGASTRVATRCAAVLREASS 378
Query: 421 SVA 413
SVA
Sbjct: 379 SVA 381
>12_02_1167 +
26647293-26648356,26648493-26648577,26649129-26649191,
26649381-26649443,26649987-26650070,26650229-26650783
Length = 637
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 358 PPSSTLRAAPKKRFGRCRALASTPPVNTLPDAG 260
PPS+T A A A+TPPV T AG
Sbjct: 592 PPSTTSNAGKLPSLPAATACATTPPVKTADAAG 624
>06_01_0310 - 2240745-2242130
Length = 461
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEV 75
A+++AY H DC VL +D +PE +
Sbjct: 219 ARALAYLHHDCRSKVLHLDVKPENI 243
>04_04_1331 - 32706043-32707248,32707411-32707652,32707737-32708562,
32708640-32708863,32708946-32709262,32709381-32709443,
32709465-32709640,32710609-32710985,32711416-32711470,
32711614-32711913
Length = 1261
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = -3
Query: 673 VVSFESLFYRPSG---TLAVSDVQYLLTFAVMLTVGLVNREPYCWRA 542
V++ FY P+G T+ D++ L A+ L +GLV +EP + A
Sbjct: 1064 VIALIERFYDPTGGKVTIDGKDIRRLNLKALRLKIGLVQQEPVLFAA 1110
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 166 SPFPQ-PERGEMRVRQR*KQQLHLLPDAASRLLLPDVRRSAEPSAHNPGGCKQC 8
SP P P + +R+R + LH P AA+ LLL RR H GG +C
Sbjct: 6 SPSPTLPTASLLLLRRRRLRLLHPPPSAAALLLLLPARRRGRHH-HRRGGVLRC 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,839,835
Number of Sequences: 37544
Number of extensions: 534964
Number of successful extensions: 1882
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1881
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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