Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0868
         (690 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                 32   0.50 
SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.67 
SB_9811| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.88 
SB_58716| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_24349| Best HMM Match : Exo_endo_phos (HMM E-Value=0.001)           30   1.5  
SB_9753| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.5  
SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)                      29   2.7  
SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)                     28   6.2  
SB_55328| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_15674| Best HMM Match : Tetradecapep (HMM E-Value=2)                28   6.2  
SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.2  

>SB_9130| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 890

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
 Frame = -1

Query: 165 HHFRN-LNVARCG--FVKGRSNNFTFYQTLHLGYFFRTFVDQQNHQHTIRVVVSNAL 4
           HH+RN   +   G  ++KG   N  FY   +    +    DQ    HTIRV+V   L
Sbjct: 601 HHYRNSTTITSSGSTWIKGNHGNLGFYLVNYEDDNWDALADQLRTNHTIRVLVLQVL 657


>SB_43399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 953

 Score = 31.5 bits (68), Expect = 0.67
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -3

Query: 169 RSPFPQPERGEMRVRQR*KQQLHLLPDAASRLLLPDVRRSAEPSAHNPGGCKQCS 5
           R PF +  R  M+V+ R   + H +     R +  + RR +  SAHNP  C Q S
Sbjct: 371 RWPFYRGRRAGMQVKARELYRRHYIDKVRPRPMDREARRPS--SAHNPNNCVQVS 423


>SB_9811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = -3

Query: 631 LAVSDVQYL---LTFAVMLTVGLVNREPYCW 548
           LA+SD+ YL   +T  + LTVG V  E YCW
Sbjct: 73  LAISDLTYLFICITTNLYLTVGTVPMEFYCW 103


>SB_58716| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -3

Query: 169 RSPFPQPERGEMRVRQR*KQQLHLLPDAASRLLLPDVRRSAEPSAHNPGGCKQCS 5
           R PF +  R  M+V+ R   + H +     R +  + RR +  SAHNP  C Q S
Sbjct: 17  RWPFYRGRRAGMQVKARELYRRHNIDKVRPRPMDREARRPS--SAHNPNNCVQVS 69


>SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1256

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
 Frame = -3

Query: 499  KCAASLRISSSGVAVRCLL-FR-QRIQASVARTVVIQRKRSAVAIMVRLPPSSTLRAAPK 326
            KC  +  +S+S +AV+C+L F  Q    ++A+          V ++VRL PS++   AP 
Sbjct: 1149 KCVFAYVLSASLLAVKCVLRFNLQTYPTAIAQQPFAFDHVGVVTVLVRL-PSTSAGLAPI 1207

Query: 325  KRFGRC--RALASTPPVNTLPDAGTTCCKR 242
             + G C   AL +T    + P  G    +R
Sbjct: 1208 GQSGICCASALVTTQGHASNPQNGVLASRR 1237


>SB_24349| Best HMM Match : Exo_endo_phos (HMM E-Value=0.001)
          Length = 534

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 169 RSPFPQPERGEMRVRQR*KQQLHLLPDAASRLLLPDVRRSAEPSAHNPGGCKQCS 5
           R PF +  R  M+V+ R   + H +     R +  + +R +  SAHNP  C Q S
Sbjct: 17  RWPFYRGRRAGMQVKARELYRRHYIDKVRPRPMDREAKRPS--SAHNPNNCVQVS 69


>SB_9753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 515

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 169 RSPFPQPERGEMRVRQR*KQQLHLLPDAASRLLLPDVRRSAEPSAHNPGGCKQCS 5
           R PF +  R  M+V+ R   + H +     R +  + +R +  SAHNP  C Q S
Sbjct: 17  RWPFYRGRRAGMQVKARELYRRHYIDKVRPRPMDREAKRPS--SAHNPNNCVQVS 69


>SB_51102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 357

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 19/82 (23%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
 Frame = -1

Query: 363 GCRPLPRYAPHQRSVSDDAGRWHPHHRSTLYLTPEQRVVSARQTSDGVEQNDNVFLVLNQ 184
           GC      +    ++ D   RW  + R   +  PE+R  S+  T  GV+     + +L+ 
Sbjct: 69  GCLSRENLSFEFENICDSDARWAVNTRHAKFYQPERRTHSSVSTPFGVKHGFRCYTLLSV 128

Query: 183 A-----FGLLDHHFRNLNVARC 133
           +     F +  + F N + +RC
Sbjct: 129 SLTCFVFSVSHNRFGNTHSSRC 150


>SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)
          Length = 766

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +3

Query: 393 RCMTTVRATLACIRWRN-SKHLTATPELLIRK 485
           RC TT  A LAC++ R+  K+   TP  L+R+
Sbjct: 64  RCKTTASAKLACLQRRSEKKYYYTTPARLVRE 95


>SB_9795| Best HMM Match : FF (HMM E-Value=2.3e-33)
          Length = 693

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +1

Query: 403 PQYAQRWLVYAGGTA-ST*PPRQSCLYASWRRISYQPDPVSNGLSLITHASSKVPDSPAR 579
           P Y  + + +  GT     PP       + + +++QP PVS    L+T   ++   SP  
Sbjct: 69  PTYPPQPMQFLPGTLPGMPPPPMFAQMMAPQAMTFQPMPVSATAPLVTQGLTQATSSPVV 128

Query: 580 RLTSPRRSADI 612
              +P + +D+
Sbjct: 129 AARTPSQDSDM 139


>SB_55328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 475

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +3

Query: 288 GVDANALHRPKRFFGAARNVEEGGSLTIIAT 380
           G D  ALH   +++   R++E+G  +T++ T
Sbjct: 417 GADEGALHEEVQYWYTKRHLEKGSKVTLVTT 447


>SB_15674| Best HMM Match : Tetradecapep (HMM E-Value=2)
          Length = 234

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 288 GVDANALHRPKRFFGAARNVEEGGSLTIIAT 380
           G D   LH+  +++   R++E+G  +T++ T
Sbjct: 90  GADVGTLHKEVQYWWTKRHLEKGSKVTLVTT 120


>SB_36821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1503

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/53 (30%), Positives = 32/53 (60%)
 Frame = +1

Query: 52  IDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVI 210
           ID R  EVT++QR +    + +T +E  S+ ++++E  +++   L E K ++I
Sbjct: 507 IDRRRREVTQLQRQL--STLENTINELRSQKLRLSEQ-LQRRTNLEEQKAELI 556


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,780,411
Number of Sequences: 59808
Number of extensions: 542207
Number of successful extensions: 1977
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1975
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)