Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0868
         (690 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           26   1.3  
U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles ...    25   1.7  
U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse tra...    25   2.3  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    25   2.3  
AY062204-1|AAL58565.1|  150|Anopheles gambiae cytochrome P450 CY...    25   2.3  
AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein p...    24   3.9  
M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles ...    24   5.2  
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   5.2  

>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 562  PDSPARRLTSPRRSADIAHQRRRACRWGDKKE-IRN 666
            P  PA   T PR +A +   RRR  RW +++  IRN
Sbjct: 1131 PTPPAPPPT-PREAARLEDGRRRVARWRERQRMIRN 1165


>U50468-1|AAA93472.1|   91|Anopheles gambiae protein ( Anopheles
           gambiae putativetubulin alpha chain mRNA, complete cds.
           ).
          Length = 91

 Score = 25.4 bits (53), Expect = 1.7
 Identities = 18/55 (32%), Positives = 22/55 (40%)
 Frame = -3

Query: 412 RTVVIQRKRSAVAIMVRLPPSSTLRAAPKKRFGRCRALASTPPVNTLPDAGTTCC 248
           RTV   R R + A+M R  PSS   A        C ++ S P       A T  C
Sbjct: 32  RTVRCPRTRRSEAVMTRSTPSSPRLAQASTCPVPCSSIWSRPSSMRCAPARTASC 86


>U03849-2|AAA53489.1| 1049|Anopheles gambiae putative reverse
            transcriptase protein.
          Length = 1049

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -3

Query: 451  CLLFRQRIQASVARTVVIQRKRSAVAIMVRLPPSSTLRAAPKKRFGRCRALASTP 287
            C+++     +S+AR   IQRK +  A+  RL P       P     RCR L   P
Sbjct: 904  CVVWSPTTASSIARIEAIQRKLTRYAL--RLLPWQDRNNLPPYA-ARCRLLGLEP 955


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 524 FDTGSGWYEMRRQLAYKQLWRGGQVLAVPPAYTSQRC 414
           F+   G YE+R + +   ++  G+VL VPPA     C
Sbjct: 116 FNNADGNYEVRYK-SNVLIYPNGEVLWVPPAIYQSSC 151



 Score = 24.2 bits (50), Expect = 3.9
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +3

Query: 363 LTIIATALLFR-CMTTVR--ATLACIRWRNSKHLTATPELLIRKLAAHFIPA 509
           L +IA  LLF   M TV    T+  I W      T    + IR +  H++PA
Sbjct: 292 LPLIAKYLLFTFIMNTVSILVTVIIINWNFRGPRTHRMPMWIRSVFLHYLPA 343


>AY062204-1|AAL58565.1|  150|Anopheles gambiae cytochrome P450
           CYP4C28 protein.
          Length = 150

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +3

Query: 150 GCGNGDREGQ-TPG*AQERRYHSARLHHSSGARLQHVVPASGKVLTGGVDANALHRP 317
           G   GDRE   T     E RY    +  S   RL   +P   + LT GVD    H P
Sbjct: 40  GIMGGDRERHPTMAELSEMRYLECCIKES--LRLFPSIPILSRTLTTGVDIEGHHIP 94


>AB090822-1|BAC57919.1|  468|Anopheles gambiae gag-like protein
           protein.
          Length = 468

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 396 CMTTVRATLACIRWRNSKHLTATPELLIR 482
           C + V  +  CIR   S HL AT E  +R
Sbjct: 419 CHSPVNHSNVCIRCGTSGHLAATCEAEVR 447


>M93691-1|AAA29366.1|  574|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 574

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 190 QPGVWPSRSPFPQPERGEMRVRQR*KQQ 107
           QP   P + P P P R   + +Q+ +QQ
Sbjct: 196 QPSASPRQPPTPLPRRSSAQPQQQQQQQ 223


>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 365 DHYRDGASLSLYDHSTRNAGLYTLAE-QQAPDRHARAAY 478
           DH R+G +L+L       A +  L++  + P+ + R AY
Sbjct: 75  DHCREGQALALQAAREHRADILLLSDMHRPPENNGRWAY 113


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 795,971
Number of Sequences: 2352
Number of extensions: 18484
Number of successful extensions: 44
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 69831885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)