Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0868
(690 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70682-6|CAH60781.2| 401|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical p... 28 7.2
Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z70750-1|CAA94736.2| 362|Caenorhabditis elegans Hypothetical pr... 27 9.6
Z68318-10|CAA92697.1| 529|Caenorhabditis elegans Hypothetical p... 27 9.6
U40942-9|AAC47074.6| 703|Caenorhabditis elegans Synaptogenesis ... 27 9.6
U25632-1|AAA93233.1| 529|Caenorhabditis elegans CCT-2 protein. 27 9.6
U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein. 27 9.6
AL031268-2|CAA20331.1| 529|Caenorhabditis elegans Hypothetical ... 27 9.6
AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior phar... 27 9.6
>Z70682-6|CAH60781.2| 401|Caenorhabditis elegans Hypothetical
protein F08G5.7 protein.
Length = 401
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 564 RFTSPTVNITAKVSRYCTSETASVPL 641
+FT+ T+ T K++ TS TAS+P+
Sbjct: 252 KFTTTTIQTTKKITTSPTSTTASIPI 277
>Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical
protein T04A8.13 protein.
Length = 791
Score = 27.9 bits (59), Expect = 7.2
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 28 DCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRH 144
DC L + PE+V E+ L K ++ S++D+ S H
Sbjct: 544 DCKKSSLALPGWPEKVFEIPELQKSFIIGSSYDDVESIH 582
>Z81066-5|CAB02969.1| 777|Caenorhabditis elegans Hypothetical
protein F17B5.1a protein.
Length = 777
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/66 (27%), Positives = 35/66 (53%)
Frame = +1
Query: 46 LLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDS 225
L I +RPE+ + + +K + S+ E +S H VIE +++ E +++V I L+
Sbjct: 444 LQILDRPEQ-ERVSKWIKSLSLRSSISEFSSEHSHSTVTVIEHSEKTYELEQNVRIDLEE 502
Query: 226 ITRLAR 243
+L +
Sbjct: 503 TLKLEK 508
>Z70750-1|CAA94736.2| 362|Caenorhabditis elegans Hypothetical
protein C50F4.1 protein.
Length = 362
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1
Query: 184 LVEHKKDVIILLDSITRLARAYNTLFRRQV 273
LV +DVI+ L+ ++LA YN+LF ++
Sbjct: 44 LVRDDQDVIVKLEEGSKLAAYYNSLFWHEI 73
>Z68318-10|CAA92697.1| 529|Caenorhabditis elegans Hypothetical
protein T21B10.7 protein.
Length = 529
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 4 QSIAYNHPDCVLM---VLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIE 171
+ + YN+P+ + V+ I+ E E LV G + STFD P + +++ E
Sbjct: 287 RQLIYNYPEQLFADAKVMAIEHADFEGIERLALVLGGEIVSTFDSPQTAQFGSCDLIEE 345
>U40942-9|AAC47074.6| 703|Caenorhabditis elegans Synaptogenesis
abnormal protein 1 protein.
Length = 703
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 569 ESGTLLLACVIRLKPFDTGS-GWYEMRRQL 483
E+G+ LLAC + KP D WY+ ++L
Sbjct: 284 ENGSALLACNVNAKPLDNVKISWYKGNQKL 313
>U25632-1|AAA93233.1| 529|Caenorhabditis elegans CCT-2 protein.
Length = 529
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 4 QSIAYNHPDCVLM---VLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIE 171
+ + YN+P+ + V+ I+ E E LV G + STFD P + +++ E
Sbjct: 287 RQLIYNYPEQLFADAKVMAIEHADFEGIERLALVLGGEIVSTFDSPQTAQFGSCDLIEE 345
>U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein.
Length = 515
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 6 EHCLQPPGLCADGSADRRTSGRSNR-DAASGKR*SCCFYL*RTRISPRSGCGNGDREGQT 182
E C P +CA G ++R N+ A G + C + PR+GC NGD +T
Sbjct: 170 EDCSNP--ICAGGCSNRGRCVAPNQCSCADGFNGTRC-----EQCLPRAGCVNGDCVNET 222
Query: 183 P 185
P
Sbjct: 223 P 223
>AL031268-2|CAA20331.1| 529|Caenorhabditis elegans Hypothetical
protein T21B10.7 protein.
Length = 529
Score = 27.5 bits (58), Expect = 9.6
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 4 QSIAYNHPDCVLM---VLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIE 171
+ + YN+P+ + V+ I+ E E LV G + STFD P + +++ E
Sbjct: 287 RQLIYNYPEQLFADAKVMAIEHADFEGIERLALVLGGEIVSTFDSPQTAQFGSCDLIEE 345
>AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior pharynx
in excess protein1 protein.
Length = 515
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 6 EHCLQPPGLCADGSADRRTSGRSNR-DAASGKR*SCCFYL*RTRISPRSGCGNGDREGQT 182
E C P +CA G ++R N+ A G + C + PR+GC NGD +T
Sbjct: 170 EDCSNP--ICAGGCSNRGRCVAPNQCSCADGFNGTRC-----EQCLPRAGCVNGDCVNET 222
Query: 183 P 185
P
Sbjct: 223 P 223
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,945,866
Number of Sequences: 27780
Number of extensions: 376559
Number of successful extensions: 1250
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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