Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0868
(690 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09720.1 68414.m01091 kinase interacting family protein simil... 29 3.8
At5g05980.1 68418.m00662 dihydrofolate synthetase/folylpolygluta... 28 5.1
At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family pr... 28 5.1
At1g68510.1 68414.m07826 LOB domain protein 42 / lateral organ b... 28 5.1
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 28 6.7
At3g12970.1 68416.m01616 expressed protein 28 6.7
At5g20050.1 68418.m02387 protein kinase family protein contains ... 27 8.9
At3g30810.1 68416.m03942 hypothetical protein 27 8.9
At2g06925.1 68415.m00790 phospholipase A2 family protein similar... 27 8.9
>At1g09720.1 68414.m01091 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 928
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +3
Query: 327 FGAARNVEEGGSLTIIATALLFRCMTTV 410
FG +E+G + T++ATA L C T+
Sbjct: 236 FGVGGEIEDGEARTLVATAALSSCKETI 263
>At5g05980.1 68418.m00662 dihydrofolate
synthetase/folylpolyglutamate synthetase (DHFS/FPGS2)
nearly identical to gi:17976705; identical to cDNA
dihydrofolate synthetase/folylpolyglutamate synthetase
(dhfs/fpgs2 gene) GI:17976704
Length = 571
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/77 (24%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = -1
Query: 252 VVSARQTSDGVEQNDNVFLVLNQAFGL-LDHHFRNLNVARCGFVKGRSNNFTFYQTLHLG 76
+++ R +D + D LV + L L+ +NV KG+ + TF +++
Sbjct: 77 LITKRSRADKSNKGDRFELVFDYLKLLDLEEDILKMNVIHVAGTKGKGSTCTFTESIIRN 136
Query: 75 YFFRTFVDQQNHQHTIR 25
Y FRT + H +R
Sbjct: 137 YGFRTGLFTSPHLIDVR 153
>At4g05170.1 68417.m00777 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 296
Score = 28.3 bits (60), Expect = 5.1
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 210 DNVFLVLNQAFGLLDHHFRN 151
DN+FLV ++A LLDH RN
Sbjct: 104 DNMFLVDSEAESLLDHEIRN 123
>At1g68510.1 68414.m07826 LOB domain protein 42 / lateral organ
boundaries domain protein 42 (LBD42) identical to LOB
DOMAIN 42 [Arabidopsis thaliana] GI:17227174; supported
by full-length cDNA gi:17227173.
Length = 233
Score = 28.3 bits (60), Expect = 5.1
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 484 SWRRISYQPDPVSNGLSLITHASSKVPDSPA-RRLTSPRRSADIAHQRRRACRWGDKKE 657
+W + D V NGL ITH + +P + A ++ P R+ DI H + GD E
Sbjct: 92 NWAQCQAAVDAVLNGLP-ITH--TPLPSASASHQIIPPHRTYDIRHVAKDPTTGGDSSE 147
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 27.9 bits (59), Expect = 6.7
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +1
Query: 4 QSIAYNHPDCVLM---VLLIDERPEEVTEMQRLVKGEVVASTFDEPAS 138
+ + YN P+ + +L I+ E E LV G +ASTFD P S
Sbjct: 288 RQLIYNFPEELFADAGILAIEHADFEGIERLGLVTGGEIASTFDNPES 335
>At3g12970.1 68416.m01616 expressed protein
Length = 381
Score = 27.9 bits (59), Expect = 6.7
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Frame = -3
Query: 565 REPYC---WRALSGLNRSILDQAGMKCAASLRISSSGVAVRCLLFRQRIQASVART 407
R P C WR L GL R Q ++S R+SSS + FR + S T
Sbjct: 112 RAPRCTVRWRELLGLKRLAKTQQEASASSSSRLSSSSPNPKTASFRHFLNRSSKST 167
>At5g20050.1 68418.m02387 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 452
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 1 AQSIAYNHPDCVLMVLLIDERPEEV 75
A+++AY H DC +L +D +PE +
Sbjct: 218 AKALAYLHHDCRSKILHLDVKPENI 242
>At3g30810.1 68416.m03942 hypothetical protein
Length = 791
Score = 27.5 bits (58), Expect = 8.9
Identities = 20/73 (27%), Positives = 35/73 (47%)
Frame = +1
Query: 445 AST*PPRQSCLYASWRRISYQPDPVSNGLSLITHASSKVPDSPARRLTSPRRSADIAHQR 624
AS R C +S +R QP+ V++ +++ +PD+ A ++ RRS+ +H
Sbjct: 312 ASAVAGRSDCAPSSPKRAWTQPEGVASPREERIESAAAIPDAAA---SADRRSSGRSHGG 368
Query: 625 RRACRWGDKKEIR 663
R R G + R
Sbjct: 369 GRGSRGGGRSSNR 381
>At2g06925.1 68415.m00790 phospholipase A2 family protein similar to
secretory low molecular weight phospholipase A2 beta
[Arabidopsis thaliana] GI:25992715; contains INTERPRO
domain IPR001211 phospholipase A2
Length = 148
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 558 GSRFTSPTVNITAKVSRYCTSETASVP 638
G + P++++T + SR C SE SVP
Sbjct: 24 GVQLIHPSISLTKECSRKCESEFCSVP 50
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,176,568
Number of Sequences: 28952
Number of extensions: 361413
Number of successful extensions: 1052
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1052
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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