Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0867
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   3.3  
SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|c...    26   4.4  
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   7.7  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +1

Query: 475 WHLLIRYSRIDRVRLLITPRTLQSFKNSCYIHLDKLQKAFI 597
           WHL     ++D     I  R LQSF  S ++H   LQ+  +
Sbjct: 243 WHL---QKKVDGQSKTIFNRVLQSFVFSLHVHTSTLQRELV 280


>SPAC6F6.18c |mug169||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = -2

Query: 137 ILFSFNEKRINCIKMQEIIYYNNTEYPVLPPSNSCSGWLLTES 9
           ++FSF EKRI  ++   I+   N    ++P  +    W+  ES
Sbjct: 11  VIFSFTEKRITSLR-GGIVTLGNFLIHLIPSQSGIIPWIQVES 52


>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 7/91 (7%)
 Frame = -2

Query: 350 IKRT-PKHYGYREHSLVINIKATLSLAEV*RFLS-----TFYCQDRFLVFN-DIYEK*TG 192
           +K T PKHY  R +S  I  K+T+++  + + +       F C+D+FL+ +  I +  T 
Sbjct: 37  VKTTAPKHYCVRPNSGKIEPKSTVNVQVLLQAMKEEPAPDFKCRDKFLIQSMAIGDADTS 96

Query: 191 *YVPSAHRYLEF*VNVPKILFSFNEKRINCI 99
               +   Y EF   + K   S  +++I C+
Sbjct: 97  ----NVENYHEFWTEMEKQGRSIFDRKIRCV 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,634,450
Number of Sequences: 5004
Number of extensions: 51314
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)