Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0867
         (684 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g49710.3 68418.m06156 expressed protein similar to unknown pr...    28   6.6  
At5g49710.2 68418.m06154 expressed protein similar to unknown pr...    28   6.6  
At5g49710.1 68418.m06155 expressed protein similar to unknown pr...    28   6.6  

>At5g49710.3 68418.m06156 expressed protein similar to unknown
           protein (pir||T05575)
          Length = 235

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 499 RIDRVRLLITPRTLQSFKNSCYIHLDKLQKAFIS*KRDAND 621
           RID+  + +  +TLQ+  N C   L+ L  A +S + D +D
Sbjct: 11  RIDKDNIRVKRKTLQALLNDCQRALELLNLAEVSSEDDEDD 51


>At5g49710.2 68418.m06154 expressed protein similar to unknown
           protein (pir||T05575)
          Length = 196

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 499 RIDRVRLLITPRTLQSFKNSCYIHLDKLQKAFIS*KRDAND 621
           RID+  + +  +TLQ+  N C   L+ L  A +S + D +D
Sbjct: 11  RIDKDNIRVKRKTLQALLNDCQRALELLNLAEVSSEDDEDD 51


>At5g49710.1 68418.m06155 expressed protein similar to unknown
           protein (pir||T05575)
          Length = 234

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 499 RIDRVRLLITPRTLQSFKNSCYIHLDKLQKAFIS*KRDAND 621
           RID+  + +  +TLQ+  N C   L+ L  A +S + D +D
Sbjct: 11  RIDKDNIRVKRKTLQALLNDCQRALELLNLAEVSSEDDEDD 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,089,504
Number of Sequences: 28952
Number of extensions: 242249
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)