Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0866
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 28 1.5
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 27 1.9
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 27 1.9
SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr 1|... 27 2.6
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce... 27 2.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 26 4.5
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi... 26 4.5
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 4.5
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 25 7.9
SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr ... 25 7.9
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 53 LKAEHLIIKGFPEKIVKLNELLETS-NFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQ 229
+K E + + P++ + E ++TS + N+S + + ++P+PT AT+ P +
Sbjct: 524 IKEEEAVSENAPQQEERSFEQIKTSIHIAPENISAIEESKSVPLPTSFATT--IPGSTSA 581
Query: 230 RLDSSELSTTQP*KE 274
LD + +T P +E
Sbjct: 582 ALDDQQ-TTEAPFEE 595
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = +2
Query: 134 QNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSS 244
Q+ ++S H L+IP+P P SNN N ++ SS
Sbjct: 61 QDSSISFTHDPLHIPLPNP---SNNNDNIFHPQVHSS 94
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +2
Query: 200 SNNEPNAKRQRLDSSELSTTQP*KEHGFMYCRMVQY 307
+N EP K LDSS++S E + YC+ V Y
Sbjct: 226 TNGEPLVKHDTLDSSDISRE---GEQLYCYCQQVSY 258
>SPAC2C4.07c |||ribonuclease II |Schizosaccharomyces pombe|chr
1|||Manual
Length = 927
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 62 PPLVSKNLCSLGPFLQRLS 6
PPL+ + LCSL P ++RL+
Sbjct: 515 PPLLCERLCSLNPNVERLA 533
>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1151
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 191 PATSNNEPNAKRQRLDSSELS 253
P S+N PN KR+R SSE S
Sbjct: 490 PTRSDNPPNEKRRRTSSSENS 510
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.6 bits (56), Expect = 3.4
Identities = 20/70 (28%), Positives = 32/70 (45%)
Frame = -3
Query: 494 ASDSTDCISASVSSCIETPKLFPSSIFGIINEIHILSKFESSTSSLMCGLTRCIRSLSGL 315
+S S +SVSS + + PSS I+ S F S+++S ++ I S S +
Sbjct: 565 SSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSISSSSTI 624
Query: 314 LQGTEPFGST 285
L P S+
Sbjct: 625 LSSPTPSTSS 634
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 4/32 (12%)
Frame = +1
Query: 313 NKPLSDL----IHLVKPHIRELVEDSNLLKMW 396
N+ L DL IHLVKP++ E N LK W
Sbjct: 1072 NQELLDLLLFSIHLVKPNVETNDEVCNTLKAW 1103
>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 970
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 286 VLPNGSVPCNKPLSDLIHLVKPH 354
VLPNG+ ++D+ H VKP+
Sbjct: 523 VLPNGNYEVGVHIADVTHFVKPN 545
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Frame = +3
Query: 582 YRRAVRELDEKEYL----SLWLVMCEIPQSLLLTSHDIC 686
YRR + + +Y+ S WLV C + ++ S+D+C
Sbjct: 482 YRRKADDETDGQYIAKLASEWLVQCRMEHPNVVKSYDLC 520
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 25.4 bits (53), Expect = 7.9
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +2
Query: 23 KVQDYKDSLKLKAEHLI--IKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA 196
++Q LKL+ E L IK E+ L E LET +NL +++ + +
Sbjct: 319 EIQTQNRDLKLETEKLQDQIKALLERNQSLQEALETVKNDEKNLREMNANYETEMKEARQ 378
Query: 197 TSNNE 211
NN+
Sbjct: 379 KLNNK 383
>SPBC577.04 |||human THOC5 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 200
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +3
Query: 177 QYQHHLRRQTMSQMLNVKDWTHRSYPQLNHRRNTGLCTAEWFSTLQQA 320
Q ++RQ MS++L +++ +SY QL + TAE S L A
Sbjct: 36 QNPEQIKRQLMSKLLILREANRKSYEQLVQAKT---ITAEHKSELDNA 80
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,912,233
Number of Sequences: 5004
Number of extensions: 61437
Number of successful extensions: 212
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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