Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0866
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0510 + 4455805-4456637,4457837-4457912                           30   1.5  
01_06_0356 + 28662956-28664043,28664255-28665139,28665227-286658...    30   2.0  
07_03_0435 + 18182657-18183509,18184477-18184574,18184663-181848...    29   2.6  
08_02_0311 - 15635165-15635590,15635777-15638698                       29   4.6  
09_04_0560 - 18519024-18519145,18519330-18519435,18519671-185199...    28   6.1  
09_04_0652 - 19227686-19227926,19229368-19232294                       28   8.1  
03_03_0188 + 15269347-15270213                                         28   8.1  
02_05_0400 + 28671562-28672219,28672365-28672441,28673679-286737...    28   8.1  

>08_01_0510 + 4455805-4456637,4457837-4457912
          Length = 302

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/48 (35%), Positives = 27/48 (56%)
 Frame = +2

Query: 38  KDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPI 181
           K S  L+ E+  +KG  ++I  L + L   N   R L+DV +DL+ P+
Sbjct: 19  KLSKLLEDEYAKLKGVQQQIAFLRDELRAMNATLRVLADVEEDLDPPV 66


>01_06_0356 +
           28662956-28664043,28664255-28665139,28665227-28665840,
           28665929-28666338
          Length = 998

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = +2

Query: 110 ELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSTTQP 265
           EL   +N Q   LSD   DL+ PIP      NN PN  R +L S+ L+   P
Sbjct: 161 ELANLNNLQILRLSD--NDLSGPIPQ--GLFNNTPNLSRIQLGSNRLTGAIP 208


>07_03_0435 +
           18182657-18183509,18184477-18184574,18184663-18184833,
           18185524-18185624,18185702-18185837,18186007-18186057,
           18186202-18186489,18186610-18186844,18186924-18187204,
           18187336-18187557
          Length = 811

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 176 PIPTPPATSNNEPNAKRQRLDSSE 247
           P P PPATS   P A  + LD+ E
Sbjct: 81  PPPPPPATSRRPPRAPERELDTEE 104


>08_02_0311 - 15635165-15635590,15635777-15638698
          Length = 1115

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 21/52 (40%), Positives = 26/52 (50%)
 Frame = -3

Query: 533  GYEIS*DLTKKAAASDSTDCISASVSSCIETPKLFPSSIFGIINEIHILSKF 378
            G EIS  LT KAAA D+ D I A +     +  L P    G++N I I   F
Sbjct: 982  GIEISFTLTAKAAADDNED-IYADLYIVKWSSLLIPPITIGMVNIIAIAFAF 1032


>09_04_0560 -
           18519024-18519145,18519330-18519435,18519671-18519907,
           18521371-18521810,18523215-18525012
          Length = 900

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +1

Query: 280 VYVLPNGSVPCNKPLSDLIHLVKPHIREL--VEDSNLLKMWISFMIPKIEDGNNFGVSIQ 453
           V  LP+G  PC K  S LI  V P   E+  V    L  + ++     +ED +NF   ++
Sbjct: 308 VLSLPSGLPPCIKSPSKLIEQVLPFAEEIVGVVMDELASLDMTVSSKNLEDLSNFFKVLR 367

Query: 454 EDTL 465
           +  L
Sbjct: 368 QQAL 371


>09_04_0652 - 19227686-19227926,19229368-19232294
          Length = 1055

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = +2

Query: 152 DVHQDLNIPIPT--PPATSNNEPNAKRQR 232
           D   DL++P+P+  PPA S + P AKR +
Sbjct: 367 DQFLDLSLPVPSRRPPAKSVSSPPAKRNK 395


>03_03_0188 + 15269347-15270213
          Length = 288

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +2

Query: 113 LLETSNFQNRNLSDVHQDLNIPIPTPPA-TSNNEPNAKRQR 232
           LL TS+  +  +S        P P PPA TSNN+P  KR R
Sbjct: 56  LLHTSSSSSATMSP--SQAPPPHPPPPAPTSNNKPPKKRPR 94


>02_05_0400 +
           28671562-28672219,28672365-28672441,28673679-28673730,
           28673851-28674008
          Length = 314

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 146 LSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELSTT 259
           L   H DL + I  PPAT + +    ++ L++S  +TT
Sbjct: 3   LFPAHPDLQLQISPPPATKSMDLGFWKRALETSTTTTT 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,051,017
Number of Sequences: 37544
Number of extensions: 361450
Number of successful extensions: 1060
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)