Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0866
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL161712-6|CAC70141.1|  248|Caenorhabditis elegans Hypothetical ...   103   1e-22
Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U50193-7|AAL11479.1|  327|Caenorhabditis elegans T box family pr...    29   4.2  
U28409-2|AAN60501.1|  288|Caenorhabditis elegans Hypothetical pr...    29   4.2  
AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical ...    29   4.2  
Z81449-11|CAD44106.2|  410|Caenorhabditis elegans Hypothetical p...    28   5.5  
Z81449-10|CAB03766.4|  419|Caenorhabditis elegans Hypothetical p...    28   5.5  
Z48241-6|CAD44100.2|  410|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z48241-5|CAA88286.4|  419|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical p...    28   5.5  
AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical ...    28   5.5  
AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical ...    28   5.5  
AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine re...    28   7.3  
U43375-3|AAA83620.1|  110|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U41011-7|AAA82290.1|  271|Caenorhabditis elegans Hypothetical pr...    27   9.6  
U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activati...    27   9.6  
L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical pr...    27   9.6  

>AL161712-6|CAC70141.1|  248|Caenorhabditis elegans Hypothetical
           protein Y66D12A.9 protein.
          Length = 248

 Score =  103 bits (247), Expect = 1e-22
 Identities = 43/79 (54%), Positives = 64/79 (81%)
 Frame = +1

Query: 268 EGTRVYVLPNGSVPCNKPLSDLIHLVKPHIRELVEDSNLLKMWISFMIPKIEDGNNFGVS 447
           +G  ++   +G+VPCN+ L+ L+ LV+P +R+ VE  N +KMWI+ +IP+IEDGNNFGV 
Sbjct: 91  KGAPIFAFSSGTVPCNENLAQLMDLVRPKLRDAVEQCNNVKMWITLLIPRIEDGNNFGVG 150

Query: 448 IQEDTLAEIQSVESEAAAF 504
           IQE+TL+E+++VESEAA+F
Sbjct: 151 IQEETLSEVRNVESEAASF 169



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 32/76 (42%), Positives = 56/76 (73%), Gaps = 5/76 (6%)
 Frame = +3

Query: 471 DTISRIRG-----SCFFCQISRYFISRAKIVSKVAKYPHIDDYRRAVRELDEKEYLSLWL 635
           +T+S +R      + F  Q+SRYF +R K+++K+AKYPH+DDYRRA+ ++DEK+++++ L
Sbjct: 154 ETLSEVRNVESEAASFLDQMSRYFTTRGKLITKIAKYPHVDDYRRAILDMDEKQFINIRL 213

Query: 636 VMCEIPQSLLLTSHDI 683
           V+ E+ ++   T HD+
Sbjct: 214 VVLEM-RNHFSTLHDM 228



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 28/77 (36%), Positives = 47/77 (61%), Gaps = 4/77 (5%)
 Frame = +2

Query: 20  KKVQDYKDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQD--LNIPIPTP- 190
           K++ +YK  L  +AE L+ + FP+K+++ + LL++       L+++  D  LNIPIP   
Sbjct: 11  KELVEYKQKLFAEAERLVKEEFPKKVIEFDALLKSPKLSYDRLAEILPDKSLNIPIPDAL 70

Query: 191 -PATSNNEPNAKRQRLD 238
              T ++EP  KRQR+D
Sbjct: 71  NGTTDSDEPAVKRQRVD 87


>Z77133-7|CAB00865.2|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 134 QNRNLSDVHQDLNIPIPTPPATSNNEPN 217
           QN N+S+VH  ++I  PT     NN  N
Sbjct: 124 QNMNISNVHNGVHISTPTENLAENNANN 151


>U50193-7|AAL11479.1|  327|Caenorhabditis elegans T box family
           protein 7 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 140 RNLSDVHQ-DLNIPIPTPPATSNNEPNAKRQRLDSSELSTTQP 265
           RN+  V +  +N  I TPPA+ + EP  KR + +   +  + P
Sbjct: 237 RNIDTVRKRKMNQIISTPPASEDEEPEVKRTKSEIEAVMFSDP 279


>U28409-2|AAN60501.1|  288|Caenorhabditis elegans Hypothetical
           protein T25D10.5 protein.
          Length = 288

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 249 NSDESSL*RLAFGSLFDV-AGGVGIGMFKS*CTSDKFRF 136
           NSD+ S+ +   G   D   GG+ + +F S  TS+K+RF
Sbjct: 9   NSDKYSI-KSVLGKFCDTNCGGINVSLFVSETTSNKYRF 46


>AL008868-4|CAO82021.1|  735|Caenorhabditis elegans Hypothetical
           protein K03A11.1 protein.
          Length = 735

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 134 QNRNLSDVHQDLNIPIPTPPATSNNEPN 217
           QN N+S+VH  ++I  PT     NN  N
Sbjct: 124 QNMNISNVHNGVHISTPTENLAENNANN 151


>Z81449-11|CAD44106.2|  410|Caenorhabditis elegans Hypothetical
           protein C32A3.3b protein.
          Length = 410

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +2

Query: 20  KKVQDYKDSLKLKAE-HLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA 196
           +K Q  +  LK + E   + K + + I  L +++++   +NRNLS     L     +P +
Sbjct: 75  EKHQRNQQHLKFEEELEQVEKTYRKDIDDLQQMVKSLVNENRNLSTTVSSLPNHADSPVS 134

Query: 197 TSNNEPNAKRQRLDSSELSTTQ 262
           TS  E + K   L+  E+S+ Q
Sbjct: 135 TSMREADLK-MLLELKEMSSQQ 155


>Z81449-10|CAB03766.4|  419|Caenorhabditis elegans Hypothetical
           protein C32A3.3a protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +2

Query: 20  KKVQDYKDSLKLKAE-HLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA 196
           +K Q  +  LK + E   + K + + I  L +++++   +NRNLS     L     +P +
Sbjct: 84  EKHQRNQQHLKFEEELEQVEKTYRKDIDDLQQMVKSLVNENRNLSTTVSSLPNHADSPVS 143

Query: 197 TSNNEPNAKRQRLDSSELSTTQ 262
           TS  E + K   L+  E+S+ Q
Sbjct: 144 TSMREADLK-MLLELKEMSSQQ 164


>Z48241-6|CAD44100.2|  410|Caenorhabditis elegans Hypothetical
           protein C32A3.3b protein.
          Length = 410

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +2

Query: 20  KKVQDYKDSLKLKAE-HLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA 196
           +K Q  +  LK + E   + K + + I  L +++++   +NRNLS     L     +P +
Sbjct: 75  EKHQRNQQHLKFEEELEQVEKTYRKDIDDLQQMVKSLVNENRNLSTTVSSLPNHADSPVS 134

Query: 197 TSNNEPNAKRQRLDSSELSTTQ 262
           TS  E + K   L+  E+S+ Q
Sbjct: 135 TSMREADLK-MLLELKEMSSQQ 155


>Z48241-5|CAA88286.4|  419|Caenorhabditis elegans Hypothetical
           protein C32A3.3a protein.
          Length = 419

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
 Frame = +2

Query: 20  KKVQDYKDSLKLKAE-HLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPA 196
           +K Q  +  LK + E   + K + + I  L +++++   +NRNLS     L     +P +
Sbjct: 84  EKHQRNQQHLKFEEELEQVEKTYRKDIDDLQQMVKSLVNENRNLSTTVSSLPNHADSPVS 143

Query: 197 TSNNEPNAKRQRLDSSELSTTQ 262
           TS  E + K   L+  E+S+ Q
Sbjct: 144 TSMREADLK-MLLELKEMSSQQ 164


>U29244-10|AAC71091.2|  908|Caenorhabditis elegans Hypothetical
           protein ZK1248.10 protein.
          Length = 908

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 101 KLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSE 247
           K +  L+ S+   RN S V ++ + P P PP  S  +P  + Q L   E
Sbjct: 123 KSDSSLDISSLTGRNSSSVLEECSSPSPVPPPRS-PKPKKRTQFLTEEE 170


>AC084158-1|AAK68563.2| 1256|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.19 protein.
          Length = 1256

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -3

Query: 410 IINEIHILSKFESSTSSLMCGLTRCIRSL 324
           ++NEI +LS   +  SS+M  L +C R+L
Sbjct: 421 LVNEISLLSSDSAEMSSVMAELDKCSRTL 449


>AC006619-3|AAK68253.1|  943|Caenorhabditis elegans Hypothetical
           protein C46C11.1 protein.
          Length = 943

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 224 RQRLDSSELSTTQP*KEHGFMYCRMVQYPATS 319
           R+++ SS LSTT P  ++  ++C    Y ATS
Sbjct: 361 REKMSSSALSTTHPPSKYLVLHCHGGGYVATS 392


>AC024806-3|AAP13749.1|  363|Caenorhabditis elegans Serpentine
           receptor, class w protein40 protein.
          Length = 363

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/24 (50%), Positives = 18/24 (75%)
 Frame = +2

Query: 314 TSHSVILYILLSHTLGNLLKIQTY 385
           TSHS++L  +LS ++ NLLKI  +
Sbjct: 112 TSHSMLLLAVLSSSIRNLLKISMW 135


>U43375-3|AAA83620.1|  110|Caenorhabditis elegans Hypothetical
           protein K09C4.7 protein.
          Length = 110

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -3

Query: 452 CIETPKLFPSSIFGIINE 399
           C+ET KLFPS+++ I N+
Sbjct: 11  CLETFKLFPSTLYNIWNQ 28


>U41011-7|AAA82290.1|  271|Caenorhabditis elegans Hypothetical
           protein D2024.2 protein.
          Length = 271

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 293 RMVQYPATSHSVILYILLSHTLGNLLKIQTYSK 391
           R+ ++P + H  I+  LL+HT G  L ++ + K
Sbjct: 237 RIEEFPNSGHYTIMTNLLNHTSGEYLAMEKFLK 269


>U02289-1|AAA18934.1| 1439|Caenorhabditis elegans GTPase-activating
           protein protein.
          Length = 1439

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 352 HIRELVEDSNLLKMWISFMIPKIEDGNNFGVSIQEDTLA 468
           H+ EL  +S +L  WIS +    EDG   G S+ E+ L+
Sbjct: 538 HLIELNTESEMLS-WISVLQSSSEDGIATGSSVDENELS 575


>L16687-1|AAK71357.2| 1317|Caenorhabditis elegans Hypothetical
           protein C04D8.1 protein.
          Length = 1317

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 352 HIRELVEDSNLLKMWISFMIPKIEDGNNFGVSIQEDTLA 468
           H+ EL  +S +L  WIS +    EDG   G S+ E+ L+
Sbjct: 416 HLIELNTESEMLS-WISVLQSSSEDGIATGSSVDENELS 453


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,947,712
Number of Sequences: 27780
Number of extensions: 337677
Number of successful extensions: 1130
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)