Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0866
         (694 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51530.1 68416.m05643 F-box family protein various predicted ...    29   2.9  
At5g58890.1 68418.m07378 MADS-box family protein various predict...    29   3.9  
At3g47080.1 68416.m05112 expressed protein                             28   5.1  
At3g43684.1 68416.m04660 hypothetical protein                          28   5.1  
At1g06650.2 68414.m00705 2-oxoglutarate-dependent dioxygenase, p...    28   5.1  
At1g06650.1 68414.m00704 2-oxoglutarate-dependent dioxygenase, p...    28   5.1  
At1g04350.1 68414.m00425 2-oxoglutarate-dependent dioxygenase, p...    28   5.1  
At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containi...    28   6.8  
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro...    28   6.8  
At1g65390.2 68414.m07419 disease resistance protein (TIR class),...    28   6.8  
At1g65390.1 68414.m07420 disease resistance protein (TIR class),...    28   6.8  
At5g25910.1 68418.m03077 disease resistance family protein conta...    27   8.9  
At3g09850.1 68416.m01175 D111/G-patch domain-containing protein ...    27   8.9  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    27   8.9  
At1g53480.1 68414.m06062 expressed protein                             27   8.9  

>At3g51530.1 68416.m05643 F-box family protein various predicted
           proteins, Arabidopsis thaliana; contains Pfam profile
           PF00646: F-box domain
          Length = 455

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = +2

Query: 215 NAKRQRLDSSELSTTQP*KEHGFMYCRMVQYPATSHSVILYILLSHTLGNLLKIQ 379
           +AKR  LD S L  T P +    MY ++V     +H V  + LL+H L +  K+Q
Sbjct: 294 SAKRLSLDLSPLKITYPTE---VMYHQLVYLEMHTHKVEWWNLLTHMLDSSPKLQ 345


>At5g58890.1 68418.m07378 MADS-box family protein various predicted
           proteins, Oryza sativa and Arabidopsis thaliana
          Length = 294

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
 Frame = +1

Query: 340 LVKPHIRELVEDSNLLKMWI------SFMIPKIEDGNNFGVSIQEDTLAEIQSVESEAAA 501
           L+ PH  ++  D NL++ W       S M+ K  DG  F +  QE      + V S +A 
Sbjct: 200 LISPHDGQIQMDPNLMEKWTDLALTQSLMMSKGNDGTQF-MQRQEQPYYNREQVVSRSAG 258

Query: 502 FFV 510
           F V
Sbjct: 259 FNV 261


>At3g47080.1 68416.m05112 expressed protein
          Length = 515

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/51 (29%), Positives = 23/51 (45%)
 Frame = +2

Query: 170 NIPIPTPPATSNNEPNAKRQRLDSSELSTTQP*KEHGFMYCRMVQYPATSH 322
           N+PI   P   N  P+  +QR+D S L  +   K  G  +   + +   SH
Sbjct: 289 NLPIAASPPVVNKGPDQTQQRIDFSSLKEST--KLDGSKWLGSINFDKVSH 337


>At3g43684.1 68416.m04660 hypothetical protein
          Length = 340

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +2

Query: 95  IVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLDSSELST 256
           IV++  L+E+    N N     Q        PPATSN  P A R+ L+ + ++T
Sbjct: 274 IVEIARLIESQEKDNHNYHVRQQS------RPPATSNLSPAAAREILEKAGITT 321


>At1g06650.2 68414.m00705 2-oxoglutarate-dependent dioxygenase,
           putative similar to 2A6 (GI:599622) and tomato ethylene
           synthesis regulatory protein E8 (SP|P10967); contains
           Pfam profile: PF00671 Iron/Ascorbate oxidoreductase
           family
          Length = 369

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 226 SKTGLIGVIHNSTIEGTRVYVLPNGSVPCNKPL-SDLIHL 342
           +KTG+ G++ +   +  R++  P   +   KPL SDL+HL
Sbjct: 22  TKTGVKGLVDSGVSQVPRIFHHPTVKLSTPKPLPSDLLHL 61


>At1g06650.1 68414.m00704 2-oxoglutarate-dependent dioxygenase,
           putative similar to 2A6 (GI:599622) and tomato ethylene
           synthesis regulatory protein E8 (SP|P10967); contains
           Pfam profile: PF00671 Iron/Ascorbate oxidoreductase
           family
          Length = 314

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 226 SKTGLIGVIHNSTIEGTRVYVLPNGSVPCNKPL-SDLIHL 342
           +KTG+ G++ +   +  R++  P   +   KPL SDL+HL
Sbjct: 22  TKTGVKGLVDSGVSQVPRIFHHPTVKLSTPKPLPSDLLHL 61


>At1g04350.1 68414.m00425 2-oxoglutarate-dependent dioxygenase,
           putative Similar to Arabidopsis 2A6 (gb|X83096) and to
           tomato ethylene synthesis regulatory protein E8
           (SP|P10967); EST gb|T76913 comes from this gene
          Length = 360

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 226 SKTGLIGVIHNSTIEGTRVYVLPNGSVPCNKP 321
           +KTG+ G+I     E  R++ LP GS+   KP
Sbjct: 18  TKTGVKGLIDAHITEIPRIFCLPQGSLSDKKP 49


>At5g63200.1 68418.m07935 tetratricopeptide repeat (TPR)-containing
           protein low similarity to SP|P28290 Sperm-specific
           antigen 2 (Cleavage signal-1 protein) (CS-1) Homo
           sapiens; contains Pfam profile PF00515: TPR Domain
          Length = 649

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 18/54 (33%), Positives = 29/54 (53%)
 Frame = +2

Query: 32  DYKDSLKLKAEHLIIKGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPP 193
           D  +++ +K E + +   P + +KL  L +  NF      D+  D +IPIPTPP
Sbjct: 2   DRPETIAVKCEPMTVDS-PSRPLKLVVLADL-NFNPPETDDL--DSSIPIPTPP 51


>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
           similarity to SP|O22315 Pre-mRNA splicing factor SF2
           (SR1 protein) {Arabidopsis thaliana}
          Length = 300

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 555 VAKYPHIDDYRRAVRELDEKEYLSLW 632
           V  Y + DD + A+R+LD+ E+ + W
Sbjct: 163 VVDYTNYDDMKYAIRKLDDTEFRNPW 188


>At1g65390.2 68414.m07419 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 77  KGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPN 217
           + F + IVK  + ++ + FQ RN    +QD ++P      T +  PN
Sbjct: 173 RDFVKSIVKAVKKVQKNFFQRRNGEIEYQDFSVPACKLTITMHESPN 219


>At1g65390.1 68414.m07420 disease resistance protein (TIR class),
           putative domain signature TIR exists, suggestive of a
           disease resistance protein.
          Length = 411

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +2

Query: 77  KGFPEKIVKLNELLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPN 217
           + F + IVK  + ++ + FQ RN    +QD ++P      T +  PN
Sbjct: 173 RDFVKSIVKAVKKVQKNFFQRRNGEIEYQDFSVPACKLTITMHESPN 219


>At5g25910.1 68418.m03077 disease resistance family protein contains
           leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; similar to Hcr2-5D [Lycopersicon
           esculentum] gi|3894393|gb|AAC78596;
          Length = 811

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 470 SASVSSCIETPKLFPSSIFGIINEIHILSKFESSTSSLMCGLTRCIRSLSGL 315
           S ++S+   +   F   I   I E+H L   + ST+     + RCI +LS L
Sbjct: 417 SVTISNNTRSNNNFTGKIPSFICELHSLILLDLSTNKFNGSIPRCIANLSTL 468


>At3g09850.1 68416.m01175 D111/G-patch domain-containing protein
           contains Pfam profile PF01585: G-patch domain
          Length = 781

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 164 DLNIPIPTPPATSNNEPNAKRQRLDSS 244
           D +I    P  +SNN  NAKR R  SS
Sbjct: 679 DFSIDTEDPSPSSNNNNNAKRNRSSSS 705


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 167  LNIPIPTPPATSNNEPNAKRQRLDSSELSTTQ 262
            L+    TPPATS+ + N    +L+SS +++T+
Sbjct: 1521 LSTTASTPPATSSGDENHISVKLESSNVASTK 1552


>At1g53480.1 68414.m06062 expressed protein
          Length = 193

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 113 LLETSNFQNRNLSDVHQDLNIPIPTPPATSNNEPNAKRQRLD 238
           +LET+ F N   S + Q L IP   PP+   N+    R+R +
Sbjct: 16  ILETNRFINLPDSRLTQTLEIPAAAPPSLWLNQRVLSRRRAE 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,965,173
Number of Sequences: 28952
Number of extensions: 309403
Number of successful extensions: 931
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)