Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0865
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    49   7e-07
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    48   1e-06
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    39   6e-04
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    38   0.001
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    35   0.010
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    30   0.36 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    25   7.7  

>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 48.8 bits (111), Expect = 7e-07
 Identities = 19/39 (48%), Positives = 30/39 (76%)
 Frame = +3

Query: 9   VKVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 125
           +KVDVD+  +IA+E  +++MP+F   KNG+K++E  GAN
Sbjct: 53  IKVDVDQLSEIAAEAGVHAMPSFFLYKNGEKIEEIVGAN 91


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +3

Query: 12  KVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 125
           KV+VDE   IAS   + +MPTFVF +NGK++D  +GAN
Sbjct: 57  KVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGAN 94


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 39.1 bits (87), Expect = 6e-04
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = +3

Query: 9   VKVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSG 119
           V+VD  E  D+ SEY+I   PT    KNGK++ ++SG
Sbjct: 76  VEVDCTEEGDLCSEYSIRGYPTLNVFKNGKQISQYSG 112


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +3

Query: 9   VKVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 125
           +K++ ++  DIA  +++N++P FV +   K L   SGAN
Sbjct: 55  LKIEAEKFSDIAESFDVNAVPLFVLIHGAKVLARISGAN 93


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 35.1 bits (77), Expect = 0.010
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 9   VKVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGANV 128
           + V+ D+  DIA +  + ++PT V  + G++LD   GA+V
Sbjct: 70  IAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADV 109


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 12  KVDVDECEDIASEYNINSMPTFV-FVKNGKKLDEFSGA 122
           K+D D   D+A +Y+I   PT + F  +G +  ++S A
Sbjct: 78  KIDADTHSDVADKYHITGFPTLIWFPPDGSEPVQYSNA 115


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1428

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -1

Query: 504  IIHLSKPDKNKNKNITIHTLKFLSNHL 424
            I HL K D+N  K   ++TL F+ N L
Sbjct: 1254 IHHLKKKDQNMEKVPVLYTLDFIWNTL 1280


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,623,148
Number of Sequences: 5004
Number of extensions: 52678
Number of successful extensions: 159
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)