Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= prgv0865
(684 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0621 - 4606739-4606894,4606976-4607098,4608199-4608288 52 3e-07
09_04_0038 - 13996505-13996836,13997047-13997077,13997307-139974... 49 4e-06
12_01_1027 + 10529545-10529777,10530269-10530668 46 2e-05
01_01_0474 - 3488739-3488876,3488996-3489118,3489878-3489991,349... 46 3e-05
12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064... 44 9e-05
05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751 44 9e-05
05_01_0489 - 4077365-4077502,4078105-4078227,4079019-4079135,407... 44 1e-04
04_04_0598 - 26514226-26514545,26516080-26516302 42 5e-04
07_01_0656 - 4912985-4913143,4913700-4913822,4914081-4914215 42 6e-04
03_06_0330 - 33178114-33178206,33178317-33178382,33179704-331798... 41 0.001
10_08_0532 + 18580579-18580746,18581923-18581997,18582659-185838... 40 0.002
02_05_0085 - 25697860-25698142,25698631-25698946,25700481-257005... 40 0.002
04_04_1248 - 32051679-32052356,32053617-32053778,32054147-320542... 38 0.007
05_05_0229 - 23457438-23457629,23457706-23457828,23457913-234580... 36 0.023
04_04_0782 + 28038292-28038413,28038577-28038778,28039221-280392... 34 0.091
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 33 0.21
04_03_0975 - 21370715-21370877,21371227-21371319,21371383-213714... 33 0.28
06_03_1048 + 27146475-27146652,27146739-27146804,27146880-271469... 32 0.37
01_06_1771 + 39787895-39788223,39788419-39788518,39788640-39788774 32 0.49
02_01_0001 - 3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,6... 31 0.85
06_01_0053 - 465385-465443,466033-466183 29 2.6
03_05_0798 + 27798095-27798190,27798325-27798366,27799152-277991... 29 2.6
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383... 29 2.6
05_07_0294 - 29038259-29038420,29038526-29038632,29038889-290390... 29 3.4
04_04_1575 + 34548774-34549109,34549979-34550185 29 4.5
01_05_0706 + 24457148-24458031,24458621-24458822,24458896-244590... 29 4.5
03_05_0328 - 23170019-23170168,23170865-23170903,23171043-231711... 28 6.0
02_04_0285 - 21585048-21585173,21585302-21585355,21585512-21585952 28 7.9
>07_01_0621 - 4606739-4606894,4606976-4607098,4608199-4608288
Length = 122
Score = 52.4 bits (120), Expect = 3e-07
Identities = 20/41 (48%), Positives = 32/41 (78%)
Frame = +3
Query: 9 VKVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 131
+KVDVDE +++A +YN+ +MPTF+F+K+G + D+ GA D
Sbjct: 63 LKVDVDELKEVAEKYNVEAMPTFLFIKDGAEADKVVGARKD 103
>09_04_0038 -
13996505-13996836,13997047-13997077,13997307-13997420,
13997546-13997686,13997787-13997851,13997943-13998039,
13998096-13998257,13998360-13998473,14001263-14001311,
14001967-14002047,14003504-14003561,14003671-14004031,
14004129-14004213,14004320-14004591,14004712-14004914,
14005419-14005494
Length = 746
Score = 48.8 bits (111), Expect = 4e-06
Identities = 18/39 (46%), Positives = 31/39 (79%)
Frame = +3
Query: 9 VKVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 125
+KVD+DE +A +N++S+P+F FV+NGK++D+ GA+
Sbjct: 694 LKVDIDELNSVAYRWNVSSVPSFFFVRNGKEIDKVVGAD 732
>12_01_1027 + 10529545-10529777,10530269-10530668
Length = 210
Score = 46.4 bits (105), Expect = 2e-05
Identities = 20/39 (51%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Frame = +3
Query: 9 VKVDVDECEDIASEYNINSM-PTFVFVKNGKKLDEFSGA 122
+K D+DE E+IA Y++N + PTF FVK G+K+D GA
Sbjct: 39 LKFDIDELEEIADSYDVNGVVPTFTFVKAGQKIDMIQGA 77
>01_01_0474 -
3488739-3488876,3488996-3489118,3489878-3489991,
3490416-3490452,3490584-3490675,3490878-3490956,
3491640-3491734,3491858-3491991,3492560-3492833,
3493743-3494015,3494976-3495512
Length = 631
Score = 46.0 bits (104), Expect = 3e-05
Identities = 18/37 (48%), Positives = 28/37 (75%)
Frame = +3
Query: 15 VDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 125
+DVDE D +S ++I + PTF F+KNG+++D+ GAN
Sbjct: 580 IDVDELMDFSSSWDIRATPTFFFLKNGEQVDKLVGAN 616
>12_01_1031 - 10605581-10606088,10606360-10606420,10606448-10606491,
10606664-10608382,10609848-10610791
Length = 1091
Score = 44.4 bits (100), Expect = 9e-05
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Frame = +3
Query: 6 RVKVDVDECEDIASEYNINSM-PTFVFVKNGKKLDEFSGAN 125
+V VD DE E + Y+I + PTF FVK+G+K+D+ GAN
Sbjct: 1032 KVNVDSDELESVTDWYDIEGIVPTFFFVKDGEKIDKIPGAN 1072
>05_06_0017 + 24964168-24964275,24965384-24965506,24965617-24965751
Length = 121
Score = 44.4 bits (100), Expect = 9e-05
Identities = 19/41 (46%), Positives = 28/41 (68%)
Frame = +3
Query: 9 VKVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 131
+KVDVDE + IA ++++ +MPTF+F+K G D GA D
Sbjct: 69 LKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAMKD 109
>05_01_0489 -
4077365-4077502,4078105-4078227,4079019-4079135,
4079243-4079263
Length = 132
Score = 44.0 bits (99), Expect = 1e-04
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = +3
Query: 15 VDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 125
+DVD+ D +S ++I + PTF F+KN K++D+ GAN
Sbjct: 81 IDVDDLMDFSSSWDIRATPTFFFIKNEKQVDKLVGAN 117
>04_04_0598 - 26514226-26514545,26516080-26516302
Length = 180
Score = 41.9 bits (94), Expect = 5e-04
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = +3
Query: 12 KVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGA 122
K++ DE DIAS+Y + S+PT + KNG+K D GA
Sbjct: 128 KLNTDENPDIASQYGVRSIPTMMIFKNGEKKDAVIGA 164
>07_01_0656 - 4912985-4913143,4913700-4913822,4914081-4914215
Length = 138
Score = 41.5 bits (93), Expect = 6e-04
Identities = 17/43 (39%), Positives = 28/43 (65%)
Frame = +3
Query: 3 ARVKVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 131
A +KVDVDE ++A + + +MPTFV + G+++ GA+ D
Sbjct: 76 AFLKVDVDELAEVARTWRVEAMPTFVLARGGEEVGRIVGADKD 118
>03_06_0330 -
33178114-33178206,33178317-33178382,33179704-33179826,
33179930-33180067
Length = 139
Score = 40.7 bits (91), Expect = 0.001
Identities = 14/30 (46%), Positives = 23/30 (76%)
Frame = +3
Query: 12 KVDVDECEDIASEYNINSMPTFVFVKNGKK 101
K+DVDE ++A ++ + +MPTFV +K GK+
Sbjct: 80 KIDVDELSEVARQWKVEAMPTFVLIKGGKE 109
>10_08_0532 +
18580579-18580746,18581923-18581997,18582659-18583887,
18584853-18585013,18585272-18585279,18587737-18588768
Length = 890
Score = 39.9 bits (89), Expect = 0.002
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +3
Query: 9 VKVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 125
++V+ +E +I+ Y + ++P FVF+K GK +D GAN
Sbjct: 55 LRVEAEEQPEISEAYGVTAVPYFVFLKEGKTVDTLEGAN 93
>02_05_0085 -
25697860-25698142,25698631-25698946,25700481-25700518,
25700955-25701036,25701815-25702016
Length = 306
Score = 39.5 bits (88), Expect = 0.002
Identities = 17/37 (45%), Positives = 25/37 (67%)
Frame = +3
Query: 12 KVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGA 122
K++ DE DIA+++ I S+PT + KNG+K D GA
Sbjct: 161 KLNTDENPDIATQFGIRSIPTMMIFKNGEKKDAVIGA 197
>04_04_1248 -
32051679-32052356,32053617-32053778,32054147-32054269,
32054686-32054793
Length = 356
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/39 (35%), Positives = 27/39 (69%)
Frame = +3
Query: 15 VDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 131
VDVD+ + ++S+ + +MPTF +K+ + +++ GAN D
Sbjct: 71 VDVDDVQSVSSKLGVKAMPTFFLIKDKEVVNKIVGANPD 109
>05_05_0229 -
23457438-23457629,23457706-23457828,23457913-23458026,
23462062-23462597,23463258-23464545
Length = 750
Score = 36.3 bits (80), Expect = 0.023
Identities = 10/31 (32%), Positives = 24/31 (77%)
Frame = +3
Query: 33 EDIASEYNINSMPTFVFVKNGKKLDEFSGAN 125
+++ ++Y++ + PTF+F+KN +++D+ G N
Sbjct: 700 QELVTQYDVRATPTFIFMKNNEEIDKLVGGN 730
>04_04_0782 +
28038292-28038413,28038577-28038778,28039221-28039246,
28039750-28039969
Length = 189
Score = 34.3 bits (75), Expect = 0.091
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +3
Query: 9 VKVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSG 119
+ D+DEC + NI PTF F ++G+K+DE G
Sbjct: 141 IYADIDECPETTQ--NIRYTPTFHFYRDGEKVDEMLG 175
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +3
Query: 9 VKVDVDECEDIASEYNINSMPTFVFVKNGKKLDE 110
+KVD+ E +A N+ ++PTF KNG ++ E
Sbjct: 621 LKVDISESPAVARAENVRTVPTFKIYKNGTRVKE 654
>04_03_0975 -
21370715-21370877,21371227-21371319,21371383-21371466,
21371745-21371869,21372360-21372600,21373640-21373734
Length = 266
Score = 32.7 bits (71), Expect = 0.28
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 12 KVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSG 119
K+D D+ +A+ Y+I +PT + K+G+K +G
Sbjct: 70 KLDTDDYPQVATSYSIERIPTVLLFKDGEKTHSITG 105
>06_03_1048 +
27146475-27146652,27146739-27146804,27146880-27146975,
27147073-27147152,27148165-27148209,27148326-27148420,
27148623-27148632
Length = 189
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 6 RVKVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 125
+V +D+D S+ I S+PTF F G+K E GAN
Sbjct: 135 KVDIDMDGVGSKLSDLKIFSVPTFHFYYQGRKTGEVVGAN 174
>01_06_1771 + 39787895-39788223,39788419-39788518,39788640-39788774
Length = 187
Score = 31.9 bits (69), Expect = 0.49
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = +3
Query: 9 VKVDVDEC-EDIASEYNINSMPTFVFVKNGKKLDEFSGANVD 131
+K+D ++ + +A E I +PTF +K+GK + E +GA +D
Sbjct: 134 LKLDCNQDNKSLAKELGIKVVPTFKILKDGKVVKEVTGAKLD 175
>02_01_0001 -
3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,
6419-6493,6619-6705,6873-6953,7021-7163,7262-7430,
7538-7667,7753-8255
Length = 577
Score = 31.1 bits (67), Expect = 0.85
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +3
Query: 3 ARVKVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGA 122
A KVD E D+A +Y++ PT +F +G D ++GA
Sbjct: 127 ALAKVDATEDTDLAQKYDVQGFPTILFFIDGVPKD-YNGA 165
>06_01_0053 - 465385-465443,466033-466183
Length = 69
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = -2
Query: 683 NHYGYVLVGTLTLKRIRHGVKKTCFYLHNIKKKNIVILVTYKS 555
N++ YV++ ++ R RH + +T + +++ K+I+ +T S
Sbjct: 25 NYFEYVIMAIMSSSRSRHNISRTPTAVDSLRIKDIIKTITQDS 67
>03_05_0798 +
27798095-27798190,27798325-27798366,27799152-27799190,
27799238-27799420
Length = 119
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 406 YFGFFYQVVAKEL*CMNCYVFIFIFVRLTQMYNLTILINV*DKFPSCF 549
+ G +++K C + ++F ++L YN + I V D FP+CF
Sbjct: 22 HLGLSSDIISKSFHCKHGKAYLFNKLKLLA-YNTVLRIIVCDNFPNCF 68
>01_03_0161 +
13337265-13337297,13337880-13338017,13338211-13338308,
13338395-13338450,13338664-13338781,13338889-13338916,
13339021-13339112,13339321-13339477,13339569-13339693,
13339785-13339884,13339991-13340059
Length = 337
Score = 29.5 bits (63), Expect = 2.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +3
Query: 15 VDVDECEDIASEYNINSMPTFVFVKNGKKLDE 110
+D D+ +D+A +Y ++ PT F G K E
Sbjct: 177 LDADKHKDLAEKYGVSGYPTLKFFPKGNKAGE 208
>05_07_0294 -
29038259-29038420,29038526-29038632,29038889-29039093,
29039173-29039536,29039588-29039772,29039879-29040080,
29040697-29041589
Length = 705
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 9 VKVDVDECEDIASEYNINSMPTFVFVKNGKKLDE 110
+KV+VDE +A N+ +P+F K+G ++ E
Sbjct: 651 LKVNVDESPMVARAENVRIVPSFKIYKDGARMKE 684
>04_04_1575 + 34548774-34549109,34549979-34550185
Length = 180
Score = 28.7 bits (61), Expect = 4.5
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 9 VKVDVDECEDIASEYNINSMPTFVFVKNGKKL 104
VK+D D + EY + +P+ + K+GK++
Sbjct: 121 VKIDHDANPQLIEEYKVYGLPSLILFKDGKEV 152
>01_05_0706 +
24457148-24458031,24458621-24458822,24458896-24459080,
24459170-24459503,24459614-24459818,24460022-24460128,
24460220-24460381
Length = 692
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 9 VKVDVDECEDIASEYNINSMPTFVFVKNGKKLDE 110
+KV+V++ +A N+ +PTF K+G K+ E
Sbjct: 638 LKVNVEDSPMVAKAENVRIVPTFKIYKDGVKVKE 671
>03_05_0328 -
23170019-23170168,23170865-23170903,23171043-23171141,
23171214-23171342,23171915-23172061,23172959-23173089,
23173938-23174157,23174294-23174387,23174469-23174581,
23174727-23174861,23175231-23175335,23175440-23175544,
23176240-23176327,23176415-23176536,23176611-23176670,
23177434-23177529,23177620-23177772,23177865-23177951,
23179179-23179246,23179603-23179726,23180235-23180330,
23180430-23180539,23180647-23180761,23181622-23181699,
23181843-23181908,23182203-23182363,23182781-23183099
Length = 1069
Score = 28.3 bits (60), Expect = 6.0
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +1
Query: 253 KMFLTSVMNLKILIFCVCSLWN 318
K + SV+ L +L +C+C WN
Sbjct: 87 KSIMKSVIQLFLLFYCICMAWN 108
>02_04_0285 - 21585048-21585173,21585302-21585355,21585512-21585952
Length = 206
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 18 DVDECEDIASEYNINSMPTFVFVKNGKKLDEFS 116
+ DE ++A I +P F F KNG L+ F+
Sbjct: 151 EYDEQSEVADRLRIKVVPLFHFYKNGVLLEAFA 183
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,016,725
Number of Sequences: 37544
Number of extensions: 258521
Number of successful extensions: 484
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 484
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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