Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0865
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)                     47   2e-05
SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)           43   3e-04
SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.)               37   0.017
SB_2654| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.50 
SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)           28   8.1  
SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)          28   8.1  
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)                 28   8.1  

>SB_14273| Best HMM Match : DUF1000 (HMM E-Value=0)
          Length = 308

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 18/39 (46%), Positives = 29/39 (74%)
 Frame = +3

Query: 9   VKVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 125
           +K+DVD C+++A++  + +MPTF F KN  K+DE  GA+
Sbjct: 62  LKIDVDVCQELAAKQGVTAMPTFQFFKNKVKVDEVRGAD 100


>SB_27151| Best HMM Match : Thioredoxin (HMM E-Value=9.2e-32)
          Length = 456

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +3

Query: 9   VKVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSGAN 125
           +KVDVD+C+  A    I +MPTF F  N  K+DE  GA+
Sbjct: 63  LKVDVDQCQLTAESCGIRAMPTFHFYHNKAKIDELRGAD 101


>SB_2655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 36.7 bits (81), Expect = 0.017
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +3

Query: 12  KVDVDECEDIASEYNINSMPTFVFVKNGKKLDEFSG 119
           KVD+D   ++A  + +N++PT + +K GK +++F G
Sbjct: 28  KVDIDVMGELAFNFGVNAVPTVIGMKGGKVINKFEG 63


>SB_2654| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 111

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +3

Query: 12  KVDVDECEDIASEYNINSMPTFVFVKNGKKLD 107
           KVD+D   ++A  + +N++PT + +K GK ++
Sbjct: 74  KVDIDVMGELAFNFGVNAVPTVIGMKGGKVME 105


>SB_17740| Best HMM Match : Thioredoxin (HMM E-Value=1.8e-27)
          Length = 472

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 48  EYNINSMPTFVFVKNGKKLDEFSGAN 125
           +YN+  +PT     +GK ++EF G N
Sbjct: 208 KYNVKFLPTIYLFHDGKFVEEFEGNN 233


>SB_10252| Best HMM Match : tRNA-synt_2b (HMM E-Value=3.2e-32)
          Length = 734

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 317 FQRLQTQKINIFKFITDVKNIFIHLLKTYTCFF 219
           F+RL+ +K ++ +   D +  F H L   +CFF
Sbjct: 356 FERLEMKKEDLLEMFKDQELFFFHELSPGSCFF 388


>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 1056

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = +3

Query: 12  KVDVDEC-EDIASEYNINSMPTFVFVKNGKKLDEFSG 119
           KVD  E  +D  S+Y ++  PT    +NG+   ++ G
Sbjct: 595 KVDCTEAGKDTCSKYGVSGYPTLKIFRNGEMSKDYDG 631


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,217,992
Number of Sequences: 59808
Number of extensions: 335338
Number of successful extensions: 724
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)