Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0864
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   1.5  
SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|ch...    27   3.4  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    27   3.4  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   4.5  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    25   7.9  

>SPAC19D5.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 87

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -1

Query: 356 RILGLSLWLYHDDALANFTSSFSCHLGSAQNVFSFILLYHHIF 228
           RILG S   +  D+     SS+S HL    N+FSF +    IF
Sbjct: 36  RILGSSTTNFVHDSTIGVKSSWSRHLIHGINIFSFSISLFLIF 78


>SPCC965.10 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 525

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 449 FVISLACDVIRVYTTTAIA 393
           FV+SLAC ++ VYT  A A
Sbjct: 237 FVVSLACYILLVYTEIAFA 255


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
 Frame = -1

Query: 356 RILGLSLWLYHDDALANFTSSFSCHLGSAQNVFSFILL----YHHIFFA 222
           R+LGLSL LYH   L  F    S     A +VF+   L    YHH+ ++
Sbjct: 640 RVLGLSLKLYHLSIL-YFFELISSIFWIAHHVFANDALLEKQYHHVLYS 687


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -3

Query: 177 IRQILIASLKFYFIYMH 127
           +  IL+ASLKFYF  +H
Sbjct: 623 LNNILVASLKFYFNLLH 639


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 619 GHGNPLTFLYLPTKNVVWEQVKFHLVK 539
           G GNP    Y P K +VW+ VK   VK
Sbjct: 62  GGGNPK---YAPNKLIVWDDVKERPVK 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,903,825
Number of Sequences: 5004
Number of extensions: 60534
Number of successful extensions: 124
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)