Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0864
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32682-5|CAA83613.1|  189|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF043703-3|AAK21500.1|  357|Caenorhabditis elegans Calcium chann...    28   7.3  
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p...    27   9.6  
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr...    27   9.6  
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.     27   9.6  
M37232-1|AAA28119.1|  251|Caenorhabditis elegans myosin I protein.     27   9.6  

>Z32682-5|CAA83613.1|  189|Caenorhabditis elegans Hypothetical
           protein M04D8.5 protein.
          Length = 189

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/36 (30%), Positives = 22/36 (61%)
 Frame = -3

Query: 360 LSHFRAVIVALS*RCTSKFYLIILLPPRVGAKCFLL 253
           +SH RA+I+A   +C + F+L+ L+ P    + + +
Sbjct: 18  ISHTRALILAFDFQCLAVFFLMFLIDPNPHLRIYFM 53


>AF043703-3|AAK21500.1|  357|Caenorhabditis elegans Calcium channel,
           beta subunit protein2 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 336 VALS*RCTSKFYLIILLPPRVGAKCFLLHTPLSPYF 229
           V L  R TSK +L+++  P +     + H PLSP F
Sbjct: 232 VELIMRMTSKLHLLLVDSPHIHTPDDVQHLPLSPIF 267


>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 417 RLHDNRHSVTIR*GKQKYMLSHFRAVIVALS*RCTSKFYLIIL-LPPRVGAKCFLLHTPL 241
           R+H N+H        + Y+L   R +  A   RC   FY I     P++  +  L H P+
Sbjct: 247 RIHFNKHGTLASCDIEHYLLEKSRVIRQAPGERCYHIFYQIYSDFKPQLRDELLLNH-PI 305

Query: 240 SPYF 229
           S Y+
Sbjct: 306 SNYW 309


>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
           protein R06C7.10 protein.
          Length = 1938

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 417 RLHDNRHSVTIR*GKQKYMLSHFRAVIVALS*RCTSKFYLIIL-LPPRVGAKCFLLHTPL 241
           R+H N+H        + Y+L   R +  A   RC   FY I     P++  +  L H P+
Sbjct: 247 RIHFNKHGTLASCDIEHYLLEKSRVIRQAPGERCYHIFYQIYSDFKPQLRDELLLNH-PI 305

Query: 240 SPYF 229
           S Y+
Sbjct: 306 SNYW 309


>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
          Length = 1938

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 417 RLHDNRHSVTIR*GKQKYMLSHFRAVIVALS*RCTSKFYLIIL-LPPRVGAKCFLLHTPL 241
           R+H N+H        + Y+L   R +  A   RC   FY I     P++  +  L H P+
Sbjct: 247 RIHFNKHGTLASCDIEHYLLEKSRVIRQAPGERCYHIFYQIYSDFKPQLRDELLLNH-PI 305

Query: 240 SPYF 229
           S Y+
Sbjct: 306 SNYW 309


>M37232-1|AAA28119.1|  251|Caenorhabditis elegans myosin I protein.
          Length = 251

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -3

Query: 417 RLHDNRHSVTIR*GKQKYMLSHFRAVIVALS*RCTSKFYLIIL-LPPRVGAKCFLLHTPL 241
           R+H N+H        + Y+L   R +  A   RC   FY I     P++  +  L H P+
Sbjct: 133 RIHFNKHGTLASCDIEHYLLEKSRVIRQAPGERCYHIFYQIYSDFKPQLRDELLLNH-PI 191

Query: 240 SPYF 229
           S Y+
Sbjct: 192 SNYW 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,078,881
Number of Sequences: 27780
Number of extensions: 339995
Number of successful extensions: 720
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)