Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0864
         (692 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   2.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.8  
DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex det...    22   4.8  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 620 NKIDTTRSPSTNKKLRSRDVGWKP 691
           N++DT   P   +KL S   GW P
Sbjct: 552 NRLDTLIYPIIRRKLGSALGGWHP 575


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = -1

Query: 380 KENKNICFRILGLS---LWLYHDDALANFTSSFSCHLGSAQNVFSF 252
           K  K + F  + +    LWLYHD  L  + S  +  L  A    S+
Sbjct: 95  KNAKKVTFHEMSIPNHYLWLYHDKTLL-YMSKLTLVLSCAMKFESY 139


>DQ325062-1|ABD14076.1|  152|Apis mellifera complementary sex
           determiner protein.
          Length = 152

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
 Frame = -1

Query: 581 EKCCVGAGEVPFSKNSSR--TFHNVNAIYFRMRATSRRY 471
           EK C       + K   R    HNV   + R R + RRY
Sbjct: 1   EKSCSRDRSREYKKKDRRYDQLHNVEEKHLRERTSRRRY 39


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,786
Number of Sequences: 438
Number of extensions: 4452
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)