Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0863
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)                    31   0.87 
SB_23389| Best HMM Match : LRR_3 (HMM E-Value=0.99)                    29   2.7  
SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
          Length = 454

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = +1

Query: 529 ACIKMLSYLSHVTVDNYKSESQTLYWPGISK*TWFVTFHIILFLLDYVFYFPF 687
           AC+ +L+Y+SHV      S+  TL        T+  TF + L+LL  + Y PF
Sbjct: 25  ACMCVLAYISHVLC----SDDDTLPRSHSGPSTFDTTFFVPLYLLPSLLYVPF 73


>SB_23389| Best HMM Match : LRR_3 (HMM E-Value=0.99)
          Length = 348

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 451 PGFEKYYVLSSFQCSSGCMFLIILL*ACIKMLSY 552
           P FE +Y+ ++    +G +FLI++L   + +L+Y
Sbjct: 267 PNFEMFYIRATTSVFAGGLFLIVILTPAMSVLTY 300


>SB_55577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 272

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 28  HISRPVQPCCCGC 66
           H+  PV PCCC C
Sbjct: 77  HVELPVSPCCCLC 89


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,702,383
Number of Sequences: 59808
Number of extensions: 366595
Number of successful extensions: 750
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)