Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0863
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical pr...    30   1.3  
U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical pr...    30   1.3  
Z93380-7|CAB07603.2|  335|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z82053-11|CAB04839.2|  335|Caenorhabditis elegans Hypothetical p...    27   9.5  

>U41541-2|ABA54426.1|  526|Caenorhabditis elegans Hypothetical
           protein C41A3.2b protein.
          Length = 526

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 245 SQKKCSLLSPKIKHMCNKLIKYWGVIAR*HSCSI 144
           S+K  S+++ K+ H CN  + Y  V A  H C++
Sbjct: 205 SEKSASVINEKVNHNCNICVVYAPVAATTHVCTM 238


>U41541-1|ABA54425.1|  795|Caenorhabditis elegans Hypothetical
           protein C41A3.2a protein.
          Length = 795

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -3

Query: 245 SQKKCSLLSPKIKHMCNKLIKYWGVIAR*HSCSI 144
           S+K  S+++ K+ H CN  + Y  V A  H C++
Sbjct: 205 SEKSASVINEKVNHNCNICVVYAPVAATTHVCTM 238


>Z93380-7|CAB07603.2|  335|Caenorhabditis elegans Hypothetical
           protein T26E3.9 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 451 PGFEKYYVLSSFQCSSGCMFLIILL*ACIKMLSY 552
           PG E+Y+   + + S     LI+L  ACI M SY
Sbjct: 228 PG-ERYWAYENVETSQSVCILIVLQFACILMSSY 260


>Z82053-11|CAB04839.2|  335|Caenorhabditis elegans Hypothetical
           protein T26E3.9 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 451 PGFEKYYVLSSFQCSSGCMFLIILL*ACIKMLSY 552
           PG E+Y+   + + S     LI+L  ACI M SY
Sbjct: 228 PG-ERYWAYENVETSQSVCILIVLQFACILMSSY 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,945,659
Number of Sequences: 27780
Number of extensions: 296570
Number of successful extensions: 650
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 650
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)