Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0862
         (693 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    22   4.1  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    22   4.1  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   5.5  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    21   9.6  

>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +1

Query: 616 YEIICDYYRAKLVICFNKFQVPWL 687
           Y  IC+++R   V+  +  +VP++
Sbjct: 294 YNEICEFHRNGTVVFLDDMKVPYM 317


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like protein
           protein.
          Length = 160

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = +3

Query: 234 KSYTAKWSPKTISDRI 281
           +++TA WSP T++  +
Sbjct: 13  RAFTASWSPDTLAKNL 28


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 684 PWNLEFIKTNNQFCSIVITNY 622
           P NL+++  + Q C I I ++
Sbjct: 168 PMNLQYLPMDRQLCHIEIESF 188


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = -1

Query: 111 FAITSF*NSNKLSFFLCYTRQCLYAVY 31
           + I  F    + SFF  +   CL  VY
Sbjct: 154 YGIQVFGTMQRTSFFKTFLNSCLMDVY 180


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,099
Number of Sequences: 336
Number of extensions: 2330
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)