Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= prgv0861
         (446 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2F5Y4 Cluster: Ribosomal protein S34; n=1; Bombyx mori...   167   1e-40
UniRef50_Q9VV39 Cluster: CG13037-PA; n=2; Sophophora|Rep: CG1303...    51   1e-05
UniRef50_Q7QIM6 Cluster: ENSANGP00000021844; n=3; Endopterygota|...    50   2e-05
UniRef50_Q17JQ3 Cluster: Mitochondrial ribosomal protein, S34, p...    45   9e-04
UniRef50_UPI0001555629 Cluster: PREDICTED: hypothetical protein;...    35   0.92 
UniRef50_Q21601 Cluster: Putative uncharacterized protein; n=2; ...    34   1.6  
UniRef50_A5E7Z2 Cluster: Putative uncharacterized protein; n=1; ...    33   2.1  
UniRef50_Q2GRS6 Cluster: Predicted protein; n=1; Chaetomium glob...    33   3.7  

>UniRef50_Q2F5Y4 Cluster: Ribosomal protein S34; n=1; Bombyx
           mori|Rep: Ribosomal protein S34 - Bombyx mori (Silk
           moth)
          Length = 195

 Score =  167 bits (405), Expect = 1e-40
 Identities = 79/96 (82%), Positives = 84/96 (87%)
 Frame = +1

Query: 7   EKLPNITEIYRTSYKTDYQLIPKREETRLLESINTIGNKADVILPNSIEMPPLMKLFIIK 186
           +KLPNITE+YRTSYKTDYQLIPK EET LLES+NTIGNKADV+LPNSIEMPPLMKLFIIK
Sbjct: 78  QKLPNITEMYRTSYKTDYQLIPKSEETSLLESMNTIGNKADVMLPNSIEMPPLMKLFIIK 137

Query: 187 DHEKKGLETSKDFMMPLSYNQSPIEQTR*QKPMNNP 294
           DHEKKGLETSKDFMMPLSYNQSP    +  K    P
Sbjct: 138 DHEKKGLETSKDFMMPLSYNQSPNSTNKMAKANEQP 173



 Score = 72.5 bits (170), Expect = 4e-12
 Identities = 32/35 (91%), Positives = 34/35 (97%)
 Frame = +3

Query: 255 NRTNKIAKANEQPTIKFTMGLGKPVSPSLYDGIPL 359
           N TNK+AKANEQPT+KFTMGLGKPVSPSLYDGIPL
Sbjct: 161 NSTNKMAKANEQPTMKFTMGLGKPVSPSLYDGIPL 195


>UniRef50_Q9VV39 Cluster: CG13037-PA; n=2; Sophophora|Rep:
           CG13037-PA - Drosophila melanogaster (Fruit fly)
          Length = 188

 Score = 50.8 bits (116), Expect = 1e-05
 Identities = 23/58 (39%), Positives = 36/58 (62%)
 Frame = +1

Query: 16  PNITEIYRTSYKTDYQLIPKREETRLLESINTIGNKADVILPNSIEMPPLMKLFIIKD 189
           P   EIY TSYK DY+L+P+ +E + L +   +     VILP  IE+PPL++  + ++
Sbjct: 82  PKPVEIYSTSYKADYELVPQDQEAKYLNNKKKV---EPVILPTKIELPPLLRELVSEE 136



 Score = 38.3 bits (85), Expect = 0.075
 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 2/35 (5%)
 Frame = +3

Query: 255 NRTNKIAKANEQPTIKFTMGLG--KPVSPSLYDGI 353
           N+  ++AK  E+PT+ F +G+G  KPVS  LY+G+
Sbjct: 153 NKMARLAKDGEKPTVNFALGVGQPKPVSAKLYEGL 187


>UniRef50_Q7QIM6 Cluster: ENSANGP00000021844; n=3;
           Endopterygota|Rep: ENSANGP00000021844 - Anopheles
           gambiae str. PEST
          Length = 187

 Score = 50.4 bits (115), Expect = 2e-05
 Identities = 24/66 (36%), Positives = 40/66 (60%)
 Frame = +1

Query: 1   RHEKLPNITEIYRTSYKTDYQLIPKREETRLLESINTIGNKADVILPNSIEMPPLMKLFI 180
           R +K PN+ +I   SYK DY+L+ K EE    + +    ++A+ I P  I++PPL++ FI
Sbjct: 78  RGQKSPNLVQIESVSYKADYRLLSKHEEPSYCKLV----DRAEKIFPREIDLPPLLQEFI 133

Query: 181 IKDHEK 198
            ++  K
Sbjct: 134 ARETGK 139



 Score = 40.7 bits (91), Expect = 0.014
 Identities = 16/31 (51%), Positives = 22/31 (70%)
 Frame = +3

Query: 267 KIAKANEQPTIKFTMGLGKPVSPSLYDGIPL 359
           ++A+  EQPT++  M +GKP SPSLY G  L
Sbjct: 157 RVAQEGEQPTVEVAMNIGKPASPSLYAGCEL 187


>UniRef50_Q17JQ3 Cluster: Mitochondrial ribosomal protein, S34,
           putative; n=3; Endopterygota|Rep: Mitochondrial
           ribosomal protein, S34, putative - Aedes aegypti
           (Yellowfever mosquito)
          Length = 182

 Score = 44.8 bits (101), Expect = 9e-04
 Identities = 22/66 (33%), Positives = 36/66 (54%)
 Frame = +1

Query: 1   RHEKLPNITEIYRTSYKTDYQLIPKREETRLLESINTIGNKADVILPNSIEMPPLMKLFI 180
           R    P + EI   SYK DY+L+ K EE    +++       + I+P  I++PPL+K F+
Sbjct: 73  RGRTYPKLVEINSVSYKADYRLLHKHEEEPYCKAV----QPTEKIIPREIDLPPLLKEFV 128

Query: 181 IKDHEK 198
            ++  K
Sbjct: 129 QRETGK 134



 Score = 40.7 bits (91), Expect = 0.014
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +3

Query: 255 NRTNKIAKANEQPTIKFTMGLGKPVSPSLY 344
           N   ++AK  E+PTI  +MGLGKP SP LY
Sbjct: 148 NNVYRLAKEGEKPTIDVSMGLGKPASPRLY 177


>UniRef50_UPI0001555629 Cluster: PREDICTED: hypothetical protein;
           n=1; Ornithorhynchus anatinus|Rep: PREDICTED:
           hypothetical protein - Ornithorhynchus anatinus
          Length = 126

 Score = 34.7 bits (76), Expect = 0.92
 Identities = 19/72 (26%), Positives = 35/72 (48%)
 Frame = +1

Query: 28  EIYRTSYKTDYQLIPKREETRLLESINTIGNKADVILPNSIEMPPLMKLFIIKDHEKKGL 207
           E+ +  Y  D++L+PK EE     S           +P  +  PPL++  I+ D +K+GL
Sbjct: 38  EVEQAMYH-DWRLVPKHEEEAFRASGAGPPEPPLYPVPRYLPYPPLLRAIILADRQKRGL 96

Query: 208 ETSKDFMMPLSY 243
               + ++ L +
Sbjct: 97  AVHPEPLLDLEH 108


>UniRef50_Q21601 Cluster: Putative uncharacterized protein; n=2;
           Caenorhabditis|Rep: Putative uncharacterized protein -
           Caenorhabditis elegans
          Length = 228

 Score = 33.9 bits (74), Expect = 1.6
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +1

Query: 22  ITEIYRTSYKTDYQLIPKREETRLLESINTIGNKADVILPNSIEMPPLMKLFIIKDHEKK 201
           + E  +   ++D+QL+ K +E     S   +    D++LP+S  +PPL      K   K 
Sbjct: 84  VYEFSKDLNRSDWQLVHKHQEKSYTSSTTPM---QDLVLPDSFPLPPLQVHLSQKSARKN 140

Query: 202 GL-ETSKDFMMPLSYNQSP 255
           GL E +     PL+ +  P
Sbjct: 141 GLDEKTVSRRAPLTLSVDP 159


>UniRef50_A5E7Z2 Cluster: Putative uncharacterized protein; n=1;
           Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
           uncharacterized protein - Lodderomyces elongisporus
           (Yeast) (Saccharomyces elongisporus)
          Length = 480

 Score = 33.5 bits (73), Expect = 2.1
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
 Frame = +1

Query: 4   HEKLPNITEIYRTSYKTDYQL-IPKREETRL---LESINTIGNKADVILPNSIEMPPL 165
           + KLP    + RT + T+  L +P+ E+TR     +S NTIG+  DVI+P S++   L
Sbjct: 371 NHKLPPYFVLTRT-FSTELSLTLPESEKTRSEYGFDSTNTIGSAQDVIIPISMDFTSL 427


>UniRef50_Q2GRS6 Cluster: Predicted protein; n=1; Chaetomium
           globosum|Rep: Predicted protein - Chaetomium globosum
           (Soil fungus)
          Length = 307

 Score = 32.7 bits (71), Expect = 3.7
 Identities = 14/56 (25%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
 Frame = +1

Query: 58  YQLIPKREETRLLESINTIGN-KADVILPNSIEMPPLMKLFIIKDHEKKGLETSKD 222
           + ++PK ++  L++S+ T+G+  A V++ N   + P++ +F  ++    G +T  D
Sbjct: 174 WPVLPKTDDLTLVQSVMTLGDFDASVLVDNFFGITPILTVFFPENDNDDGDDTDSD 229


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 394,040,695
Number of Sequences: 1657284
Number of extensions: 7124630
Number of successful extensions: 15357
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15075
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15353
length of database: 575,637,011
effective HSP length: 93
effective length of database: 421,509,599
effective search space used: 23183027945
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)